do shell script always uses /bin/sh, even if your default shell, shebang, or $PATH variable is set to something else.
To force it to use a different shell, you will need to call that shell. To run a command in bash, use the argument -c:
/usr/local/bin/bash -c 'echo $BASH_VERSION'
If you only want to run a single bash script, you can omit the -c with: /usr/local/bin/bash /path/to/script.bash
In AppleScript:
do shell script "/usr/local/bin/bash -c 'echo $BASH_VERSION'"
The man page entry for bash -c:
-c command_string
If the -c option is present, then commands are read from the first non-option argument command_string.