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File:Distance Correlation Examples.svg

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    Description
    English: Recreation of File:Correlation_examples2.svg using the distance correlation method (dcor from the R energy library)
    Date
    Source Created in R using a modification of DenisBoigelot's script at File:Correlation_examples2.svg
    Author Naught101
    Other information
    #Title: An example of the correlation of x and y for various distributions of (x,y) pairs
    #Tags: Mathematics; Statistics; Correlation
    #Author: Denis Boigelot
    #Packets needed : mvtnorm (rmvnorm), RSVGTipsDevice (devSVGTips)
    #How to use: output()
    #
    #This is an translated version in R of an Matematica 6 code by Imagecreator.
    
    library(mvtnorm)
    library(energy)
    library(RSVGTipsDevice)
    
    MyPlot <- function(xy, xlim = c(-4, 4), ylim = c(-4, 4), eps = 1e-15) {
      title = round(dcor(xy[,1], xy[,2]), 1)
      if (sd(xy[,2]) < eps) title = "" # corr. coeff. is undefined
      plot(xy, main = title, xlab = "", ylab = "",
           col = "darkblue", pch = 16, cex = 0.2,
           xaxt = "n", yaxt = "n", bty = "n",
           xlim = xlim, ylim = ylim)
    }
    
    MvNormal <- function(n = 1000, cor = 0.8) {
      for (i in cor) {
         sd = matrix(c(1, i, i, 1), ncol = 2)
         x = rmvnorm(n, c(0, 0), sd)
         MyPlot(x)
      }
    }
    
    rotation <- function(t, X) return(X %*% matrix(c(cos(t), sin(t), -sin(t), cos(t)), ncol = 2))
    
    RotNormal <- function(n = 1000, t = pi/2) {
      sd = matrix(c(1, 1, 1, 1), ncol = 2)
      x = rmvnorm(n, c(0, 0), sd)
      for (i in t)
         MyPlot(rotation(i, x))
    }
    
    Others <- function(n = 1000, spread = 1) {
      # x = seq(-1, 1, length.out = n) #generates a time series (serial dependence)
      x = runif(n, -1, 1) #same image, not a time series (no serial dependence)
      y = 4 * (x^2 - 1/2)^2 + runif(n, -1, 1) /3 * spread
      MyPlot(cbind(x,y), xlim = c(-1, 1), ylim = c(-1/3, 1+1/3))
    
      y = runif(n, -1, 1)
      xy = rotation(-pi/8, cbind(x,y))
      lim = sqrt(2+sqrt(2)) / sqrt(2)
      MyPlot(cbind(xy[,1], xy[,2]*spread), xlim = c(-lim, lim), ylim = c(-lim, lim))
    
      xy = rotation(-pi/8, xy)
      MyPlot(cbind(xy[,1], xy[,2]*spread), xlim = c(-sqrt(2), sqrt(2)), ylim = c(-sqrt(2), sqrt(2)))
      
      y = 2*x^2 + runif(n, -1, 1) * spread
      MyPlot(cbind(x,y), xlim = c(-1, 1), ylim = c(-1, 3))
    
      y = (x^2 + runif(n, 0, 1/2) * spread) * sample(seq(-1, 1, 2), n, replace = TRUE)
      MyPlot(cbind(x,y), xlim = c(-1.5, 1.5), ylim = c(-1.5, 1.5))
    
      y = cos(x*pi) + rnorm(n, 0, 1/8) * spread
      x = sin(x*pi) + rnorm(n, 0, 1/8) * spread
      MyPlot(cbind(x,y), xlim = c(-1.5, 1.5), ylim = c(-1.5, 1.5))
    
      xy1 = rmvnorm(n/4, c( 3,  3), diag(2)*spread)
      xy2 = rmvnorm(n/4, c(-3,  3), diag(2)*spread)
      xy3 = rmvnorm(n/4, c(-3, -3), diag(2)*spread)
      xy4 = rmvnorm(n/4, c( 3, -3), diag(2)*spread)
      MyPlot(rbind(xy1, xy2, xy3, xy4), xlim = c(-3-4, 3+4), ylim = c(-3-4, 3+4))
    }
    
    output <- function() {
      devSVGTips(width = 7, height = 4.4) # remove first and last line for no svg exporting
      par(mfrow = c(4, 7), oma = c(0,0,0,0), mar=c(2,2,2,0))
      MvNormal(800, c(1.0, 0.8, 0.4, 0.0, -0.4, -0.8, -1.0));
      RotNormal(200, c(0, pi/12, pi/6, pi/4, pi/2-pi/6, pi/2-pi/12, pi/2));
      Others(800)
      Others(800, 0.3)
      dev.off() # remove first and last line for no svg exporting
    
     This W3C-unspecified chart was created with R.

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    I, the copyright holder of this work, hereby publish it under the following licenses:
    GNU head Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the section entitled GNU Free Documentation License.
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    This file is licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license.
    You are free:
    • to share – to copy, distribute and transmit the work
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    Under the following conditions:
    • attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
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    Date/TimeThumbnailDimensionsUserComment
    current03:38, 2 March 2012Thumbnail for version as of 03:38, 2 March 2012506 × 318 (1.02 MB)Naught101 (talk | contribs){{subst:Upload marker added by en.wp UW}} {{Information |Description = {{en|Recreation of File:Correlation_examples2.svg using the distance correlation method (dcor from the R energy l...

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