Issues

• Splice Site Detection or Removal

  enhancement
  Adibvafa/CodonTransformer#39 · Filter by author nwheatleKite opened on Feb 3, 2026

• codon sequence optimization for multiple species

  enhancement
  Adibvafa/CodonTransformer#29 · Filter by author chaofan520 opened on Apr 25, 2025
  2

• Error in MLM logic

  bug
  Adibvafa/CodonTransformer#28 · Filter by author gui11aume opened on Apr 15, 2025
  

• CodonEvaluation RNAfold_MFE & exclude DNA enzyme cleavage sites

  bug
  Adibvafa/CodonTransformer#25 · Filter by author kehan777 opened on Apr 5, 2025

• Finetune tokenizer padding is not set to custom max length

  Adibvafa/CodonTransformer#18 · Filter by author ghost opened on Jan 4, 2025

• NotImplementedError for iterator in IterableData class while debugging CodonTransformer finetuning

  bug
  Adibvafa/CodonTransformer#17 · Filter by author Cauwth opened on Dec 25, 2024
  8

  

• Allow user-defined rules

  enhancement
  Adibvafa/CodonTransformer#7 · Filter by author VittorioRainaldi opened on Sep 18, 2024
  6

  

• Add option to avoid user-defined restriction sites

  enhancement
  Adibvafa/CodonTransformer#6 · Filter by author VittorioRainaldi opened on Sep 18, 2024
  2

  

• Docker support

  enhancementgood first issue
  Adibvafa/CodonTransformer#3 · Filter by author JackKay404 opened on Sep 16, 2024

• Add support for expanding the list of organisms

  bugenhancement
  Adibvafa/CodonTransformer#2 · Filter by author JackKay404 opened on Sep 16, 2024
  13