Issues

• [Feature Request] Can BioAlignment support gap_incentive ?

  enhancementfeature-request
  BioJulia/BioAlignments.jl#92 · Filter by author SeqCrafter opened on Dec 5, 2025

• Add a cigar method and BioAlignments.Alignment constructor for XAM.jl optimisation

  enhancementfeature-request
  BioJulia/BioAlignments.jl#87 · Filter by author CiaranOMara opened on Oct 15, 2022

• Friendly request to @deprecate API changes via semver

  docsenhancement
  BioJulia/BioAlignments.jl#84 · Filter by author dehann opened on Aug 24, 2022
  2

• Refactor tests

  enhancement
  BioJulia/BioAlignments.jl#81 · Filter by author kescobo opened on Jun 16, 2022

• Weird error with AffineGapScoreModel()

  BioJulia/BioAlignments.jl#79 · Filter by author jakobnissen opened on Jun 15, 2022

• Alignment of 2 LongAminoAcidSeq with AffineGapScoreModel from docs goes out of bounds

  BioJulia/BioAlignments.jl#75 · Filter by author kool7d opened on May 26, 2022
  1

• Extract start and end positions from a PairwiseAlignment

  feature-request
  BioJulia/BioAlignments.jl#73 · Filter by author rohanmaddamsetti opened on Mar 28, 2022
  1

• AlignmentAnchor method signature

  BioJulia/BioAlignments.jl#69 · Filter by author CiaranOMara opened on Feb 12, 2022
  1

• OP_BACK has no use?

  BioJulia/BioAlignments.jl#63 · Filter by author jakobnissen opened on Jan 27, 2022
  2

• The API of accessing fields of BioAlignments

  BioJulia/BioAlignments.jl#58 · Filter by author jakobnissen opened on Oct 26, 2021

• What does the two integer fields in Alignment do?

  BioJulia/BioAlignments.jl#57 · Filter by author jakobnissen opened on Oct 13, 2021
  1

• Get reference and query from PairwiseAlignment

  BioJulia/BioAlignments.jl#55 · Filter by author jakobnissen opened on Jul 23, 2021
  2

• Inconsistent when aligning distinct sequence types

  BioJulia/BioAlignments.jl#54 · Filter by author jakobnissen opened on Jul 19, 2021
  1

• Multiple alignment manipulation

  BioJulia/BioAlignments.jl#51 · Filter by author BioTurboNick opened on May 18, 2021
  3

• Obscure error when aligning sequences with gaps

  BioJulia/BioAlignments.jl#46 · Filter by author jakobnissen opened on Feb 15, 2021

• How to get the score of two alignments?

  BioJulia/BioAlignments.jl#43 · Filter by author aadimator opened on Sep 21, 2020

• Sequence logo plots

  BioJulia/BioAlignments.jl#31 · Filter by author cossio opened on Jul 1, 2019
  1

• Can't compiled by PackageCompile

  BioJulia/BioAlignments.jl#30 · Filter by author aqzas opened on May 28, 2019

• find() instead of findall() in hts-files.md

  BioJulia/BioAlignments.jl#28 · Filter by author aalexandersson opened on Feb 6, 2019

• LocalAlignment find lower score than biopython/scikit-bio implementations

  pinned
  BioJulia/BioAlignments.jl#27 · Filter by author diegozea opened on Jan 17, 2019
  5

• Version trouble with IntervalTrees. Only able to install "BioAlignments" after removing package "Bio"

  BioJulia/BioAlignments.jl#17 · Filter by author kopperud opened on Jun 30, 2018
  1

• Support the mpileup format

  BioJulia/BioAlignments.jl#16 · Filter by author TransGirlCodes opened on Jun 25, 2018 · Version 0.4