Issues

• ModuleNotFoundError: No module named 'pkg_resources' with Python 3.12+

  FunctionLab/selene#201 · Filter by author MuhammedHasan opened on Mar 11, 2026

• tangermeme backend

  FunctionLab/selene#197 · Filter by author jmschrei opened on May 31, 2024

• Is there a model fine-tuning function?

  FunctionLab/selene#195 · Filter by author HanwenZhu98 opened on Dec 10, 2023

• Columns and DataType Not Explicitly Set on line 25 of download_data.py

  FunctionLab/selene#194 · Filter by author CodeSmileBot opened on Nov 9, 2023

• version update

  FunctionLab/selene#193 · Filter by author guandailu opened on Jul 6, 2023

• Model source code file should be copied to the output directory

  enhancement
  FunctionLab/selene#190 · Filter by author evancofer opened on Dec 2, 2022

• Loggers never close

  FunctionLab/selene#189 · Filter by author rfriedman22 opened on Nov 14, 2022

• model is suitable for classification？

  FunctionLab/selene#182 · Filter by author Jasonxu0109 opened on Jan 12, 2022

• Support NN models with multiple inputs

  FunctionLab/selene#161 · Filter by author san9zubr opened on Feb 27, 2021
  2

• Support for non-classifier models in IntervalSampler and RandomSampler

  FunctionLab/selene#148 · Filter by author laueste opened on Jun 26, 2020
  1

• Train and evaluate without evalute_model initialization in config does not work

  bug
  FunctionLab/selene#146 · Filter by author kathyxchen opened on Jun 3, 2020
  4

• MPRA tutorial - testing r2 with CPU not agreeing with GPUs.

  FunctionLab/selene#145 · Filter by author ilibarra opened on May 25, 2020
  1

• Prediction functions crash when filtered input is empty

  bug
  FunctionLab/selene#136 · Filter by author evancofer opened on Jan 28, 2020

• add parameter to append existing columns in VCF to output files in variant effect prediction

  enhancement
  FunctionLab/selene#129 · Filter by author kathyxchen opened on Dec 3, 2019
  

• Fasta file in quickstart_training config file conflicts with zenodo

  bug
  FunctionLab/selene#109 · Filter by author evancofer opened on Aug 17, 2019

• Add a function to export Selene-trained models to Kipoi

  FunctionLab/selene#62 · Filter by author kathyxchen opened on Dec 13, 2018

• Support models that predict continuous-valued outputs

  enhancement
  FunctionLab/selene#59 · Filter by author kathyxchen opened on Dec 7, 2018

• Add support for circular chromosomes

  enhancement
  FunctionLab/selene#51 · Filter by author evancofer opened on Sep 10, 2018

• GenomicFeatures should be able to label multiple adjacent "bins" in a sequence

  FunctionLab/selene#46 · Filter by author kathyxchen opened on Aug 7, 2018

• GTF file parser for non-DNA sequence-based training

  FunctionLab/selene#45 · Filter by author kathyxchen opened on Aug 7, 2018

• ISM "interpret" based on score (diff or logit)

  FunctionLab/selene#30 · Filter by author kathyxchen opened on Apr 27, 2018

• Adding an RNA sequence class?

  question
  FunctionLab/selene#29 · Filter by author kathyxchen opened on Apr 25, 2018
  1

• Check for a strand column in the tabix-indexed file

  FunctionLab/selene#26 · Filter by author kathyxchen opened on Apr 19, 2018

• speed up in silico mutagenesis

  enhancement
  FunctionLab/selene#23 · Filter by author kathyxchen opened on Apr 13, 2018
  1

• Create a sampler that uses queries from SQL/pandas?

  question
  FunctionLab/selene#19 · Filter by author kathyxchen opened on Apr 13, 2018