This directory contains samples for Cloud Healthcare API. Cloud Healthcare API implements healthcare-native protocols and formats to accelerate ingestion, storage, analysis, and integration of healthcare data with cloud-based applications. - See the migration guide for information about migrating to Python client library v0.25.1.
To run the sample, you need to enable the API at: https://console.cloud.google.com/apis/library/healthcare.googleapis.com
To run the sample, you need to have the following roles: * Healthcare Dataset Administrator * Healthcare DICOM Store Administrator * Healthcare DICOM Editor * Healthcare DICOM Viewer
This sample requires you to have authentication setup. Refer to the Authentication Getting Started Guide for instructions on setting up credentials for applications.
Clone python-docs-samples and change directory to the sample directory you want to use.
$ git clone https://github.com/GoogleCloudPlatform/python-docs-samples.git
Install pip and virtualenv if you do not already have them. You may want to refer to the Python Development Environment Setup Guide for Google Cloud Platform for instructions.
Create a virtualenv. Samples are compatible with Python 2.7 and 3.4+.
$ virtualenv env $ source env/bin/activate
Install the dependencies needed to run the samples.
$ pip install -r requirements.txt
To run this sample:
$ python dicom_stores.py
usage: dicom_stores.py [-h] [--project_id PROJECT_ID] [--location LOCATION]
[--dataset_id DATASET_ID]
[--dicom_store_id DICOM_STORE_ID]
[--pubsub_topic PUBSUB_TOPIC] [--uri_prefix URI_PREFIX]
[--content_uri CONTENT_URI]
[--export_format {FORMAT_UNSPECIFIED,DICOM,JSON_BIGQUERY_IMPORT}]
[--member MEMBER] [--role ROLE]
{create-dicom-store,delete-dicom-store,get-dicom-store,list-dicom-stores,patch-dicom-store,get_iam_policy,set_iam_policy,export-dicom-store,import-dicom-store}
...
positional arguments:
{create-dicom-store,delete-dicom-store,get-dicom-store,list-dicom-stores,patch-dicom-store,get_iam_policy,set_iam_policy,export-dicom-store,import-dicom-store}
create-dicom-store Creates a new DICOM store within the parent dataset.
delete-dicom-store Deletes the specified DICOM store.
get-dicom-store Gets the specified DICOM store.
list-dicom-stores Lists the DICOM stores in the given dataset.
patch-dicom-store Updates the DICOM store.
get_iam_policy Gets the IAM policy for the specified DICOM store.
set_iam_policy Sets the IAM policy for the specified DICOM store. A
single member will be assigned a single role. A member
can be any of: - allUsers, that is, anyone -
allAuthenticatedUsers, anyone authenticated with a
Google account - user:email, as in
'user:somebody@example.com' - group:email, as in
'group:admins@example.com' - domain:domainname, as in
'domain:example.com' - serviceAccount:email, as in
'serviceAccount:my-other-
app@appspot.gserviceaccount.com' A role can be any IAM
role, such as 'roles/viewer', 'roles/owner', or
'roles/editor'
export-dicom-store Export data to a Google Cloud Storage bucket by
copying it from the DICOM store.
import-dicom-store Imports data into the DICOM store by copying it from
the specified source.
optional arguments:
-h, --help show this help message and exit
--project_id PROJECT_ID
GCP project name
--location LOCATION GCP location
--dataset_id DATASET_ID
Name of dataset
--dicom_store_id DICOM_STORE_ID
Name of DICOM store
--pubsub_topic PUBSUB_TOPIC
The Cloud Pub/Sub topic that notifications of changes
are published on
--uri_prefix URI_PREFIX
URI for a Google Cloud Storage directory to which
result files should be written (e.g., "bucket-
id/path/to/destination/dir").
--content_uri CONTENT_URI
URI for a Google Cloud Storage directory from which
files should be imported (e.g., "bucket-
id/path/to/destination/dir").
--export_format {FORMAT_UNSPECIFIED,DICOM,JSON_BIGQUERY_IMPORT}
Specifies the output format. If the format is
unspecified, the default functionality is to export to
DICOM.
--member MEMBER Member to add to IAM policy (e.g.
"domain:example.com")
--role ROLE IAM Role to give to member (e.g. "roles/viewer")
To run this sample:
$ python dicomweb.py
usage: dicomweb.py [-h] [--project_id PROJECT_ID] [--location LOCATION]
[--dataset_id DATASET_ID] [--dicom_store_id DICOM_STORE_ID]
[--dcm_file DCM_FILE] [--study_uid STUDY_UID]
[--series_uid SERIES_UID] [--instance_uid INSTANCE_UID]
{dicomweb-store-instance,dicomweb-search-instance,dicomweb-retrieve-study,dicomweb-search-studies,dicomweb-retrieve-instance,dicomweb-retrieve-rendered,dicomweb-delete-study}
...
positional arguments:
{dicomweb-store-instance,dicomweb-search-instance,dicomweb-retrieve-study,dicomweb-search-studies,dicomweb-retrieve-instance,dicomweb-retrieve-rendered,dicomweb-delete-study}
dicomweb-store-instance
Handles the POST requests specified in the DICOMweb
standard.
dicomweb-search-instance
Handles the GET requests specified in DICOMweb
standard.
dicomweb-retrieve-study
Handles the GET requests specified in the DICOMweb
standard.
dicomweb-search-studies
Handles the GET requests specified in the DICOMweb
standard.
dicomweb-retrieve-instance
Handles the GET requests specified in the DICOMweb
standard.
dicomweb-retrieve-rendered
Handles the GET requests specified in the DICOMweb
standard.
dicomweb-delete-study
Handles DELETE requests equivalent to the GET requests
specified in the WADO-RS standard.
optional arguments:
-h, --help show this help message and exit
--project_id PROJECT_ID
GCP project name
--location LOCATION GCP location
--dataset_id DATASET_ID
Name of dataset
--dicom_store_id DICOM_STORE_ID
Name of DICOM store
--dcm_file DCM_FILE File name for DCM file to store.
--study_uid STUDY_UID
Unique identifier for a study.
--series_uid SERIES_UID
Unique identifier for a series.
--instance_uid INSTANCE_UID
Unique identifier for an instance.
This sample uses the Google Cloud Client Library for Python. You can read the documentation for more details on API usage and use GitHub to browse the source and report issues.