Issues

• Human PDAC (ST) for Spot Deconvolution is missing true_p.csv

  OmicsML/dance#455 · Filter by author alyosama opened on Jun 28, 2024

• Tutorial notebook is outdated

  OmicsML/dance#432 · Filter by author wehos opened on Mar 27, 2024
  1

• Errors with Installation

  OmicsML/dance#431 · Filter by author wehos opened on Mar 27, 2024
  2

• Pipeline bypass mechanism to replace *PlaceHolder transforms

  OmicsML/dance#421 · Filter by author RemyLau opened on Feb 19, 2024

• Improve train/val/test data retrieval mech (instead of getting them individually?)

  OmicsML/dance#420 · Filter by author RemyLau opened on Feb 19, 2024

• Random segfault when running pipeline tuning with wandb on certain machines

  bughelp wanted
  OmicsML/dance#407 · Filter by author RemyLau opened on Jan 30, 2024

• __init__.py missing from dance/metadata

  OmicsML/dance#404 · Filter by author cwilson51 opened on Jan 26, 2024

• Config support

  OmicsML/dance#384 · Filter by author RemyLau opened on Dec 12, 2023

• Feature: sanity checks

  OmicsML/dance#378 · Filter by author RemyLau opened on Dec 6, 2023

• Refactor multimodal dataset object to use the dance abstract dataset class

  OmicsML/dance#233 · Filter by author RemyLau opened on Mar 8, 2023

• Fix reported imputation metrics on readme for GraphSCI and DeepImpute

  Priority-P0
  OmicsML/dance#227 · Filter by author RemyLau opened on Mar 3, 2023

• Use the download_unzip utility in ImputationDataset

  OmicsML/dance#224 · Filter by author RemyLau opened on Feb 28, 2023

• Unify kwarg: seed -> random_state

  OmicsML/dance#222 · Filter by author RemyLau opened on Feb 27, 2023

• Make utils for generating dgl or pyg graphs from processed data

  enhancement
  OmicsML/dance#221 · Filter by author RemyLau opened on Feb 26, 2023

• Add option for return_type to take a list of values aligned with the specified channels

  enhancement
  OmicsML/dance#216 · Filter by author RemyLau opened on Feb 26, 2023

• Add option to .score method to take index option, which indicates which samples we want to calculate the scores

  enhancement
  OmicsML/dance#214 · Filter by author RemyLau opened on Feb 23, 2023

• Fix scmm error due to zero total counts calling torch.lgamma (called by torch.distributions.NegativeBinomial)

  OmicsML/dance#166 · Filter by author RemyLau opened on Jan 29, 2023

• Make util for auto device selection

  OmicsML/dance#162 · Filter by author RemyLau opened on Jan 26, 2023

• Model object abstraction and refactoring

  Priority-P1
  OmicsML/dance#143 · Filter by author RemyLau opened on Jan 20, 2023

• Add more info about key error from get_feature, e.g., what channel type

  OmicsML/dance#125 · Filter by author RemyLau opened on Jan 10, 2023

• Exclude benchmark runs from default pytest runs, make lite-bench and full-bench test options (tox)

  OmicsML/dance#122 · Filter by author RemyLau opened on Jan 9, 2023

• DSTG link graph add connections between real spots?

  question
  OmicsML/dance#104 · Filter by author RemyLau opened on Dec 31, 2022
  1

• Add random_state option to PCA transforms

  OmicsML/dance#87 · Filter by author RemyLau opened on Dec 18, 2022

• Unifying base data object

  Priority-P0
  OmicsML/dance#49 · Filter by author RemyLau opened on Nov 8, 2022

• Some questions about general wrapper for datasets

  question
  OmicsML/dance#38 · Filter by author HelloWorldLTY opened on Oct 16, 2022
  8