Issues

• Redefine the plot_points function in lefse_plot_cladogram.py to beautify the output results. And solve the shadow bug issue.

  SegataLab/lefse#36 · Filter by author LianheCai078 opened on Jul 14, 2025

• LDA effect size no longer working!

  SegataLab/lefse#34 · Filter by author DrKADunn opened on Jan 17, 2025
  1

• How to use LDA when the number of samples is smaller than the number of features?

  SegataLab/lefse#33 · Filter by author Wu-BioAI opened on Dec 25, 2023

• Lefse Installation "No ctypes found" error

  SegataLab/lefse#32 · Filter by author UmaJan opened on Dec 25, 2023

• Please correct the “lefse_plot_cladogram.py” Line 270 in biobakery lefse online server

  SegataLab/lefse#31 · Filter by author jahernayeem opened on Jul 2, 2023
  2

• Lefse Installation Issue

  SegataLab/lefse#30 · Filter by author Hoeferlin opened on May 17, 2023
  6

• lefse.error

  SegataLab/lefse#29 · Filter by author Yuxia88 opened on Feb 9, 2023
  2

• import lefse.lefse error

  SegataLab/lefse#28 · Filter by author hahahaL opened on Jan 6, 2023

• The result is not replicated from the same command

  SegataLab/lefse#27 · Filter by author nttg8100 opened on Dec 29, 2022

• rpy2.rinterface_lib.embedded.RRuntimeError: Error: protect(): protection stack overflow

  SegataLab/lefse#26 · Filter by author huangziyan11111 opened on Dec 9, 2022

• Plot only genus

  SegataLab/lefse#25 · Filter by author Kanyerezi30 opened on Oct 13, 2022

• issue with wilcoxon signed rank test

  SegataLab/lefse#24 · Filter by author lauramason326 opened on Oct 4, 2022

• How best to integrate results from multiple marker genes

  SegataLab/lefse#23 · Filter by author lauramason326 opened on Sep 6, 2022

• lefse galaxy server does not work

  SegataLab/lefse#22 · Filter by author manuss11 opened on Aug 19, 2022

• lefse galaxy server

  SegataLab/lefse#19 · Filter by author dawnmy opened on May 12, 2022

• installation problem

  SegataLab/lefse#18 · Filter by author shinepreventer opened on Apr 20, 2022

• argument parsing for lefse_format_input

  SegataLab/lefse#17 · Filter by author robert102 opened on Mar 15, 2022

• An error in lefse v1.1.2

  SegataLab/lefse#14 · Filter by author liu-congcong opened on Sep 26, 2021
  2

• reproducibility of results between github, galaxy instance and biobakery's LEfSe scripts

  SegataLab/lefse#13 · Filter by author glucksfall opened on Sep 8, 2021
  1

• KW/Wilcoxon tests stratification

  SegataLab/lefse#12 · Filter by author jwframe28 opened on Aug 28, 2021

• lefse doesn't work with python 3

  SegataLab/lefse#11 · Filter by author rpelicae opened on Jul 26, 2021
  2

• kruskal screening p-values and fdr

  SegataLab/lefse#8 · Filter by author raygozag opened on Apr 13, 2021
  1

• subclass labels changed if they contain class characters

  SegataLab/lefse#6 · Filter by author nstrom1 opened on Mar 15, 2021