Issues

• Duplicated sequences in reference fasta

  SegataLab/panphlan#42 · Filter by author robbueck opened on Nov 29, 2024

• I must merge the Pair-ends metagenomic data together, and then starting running the panphlan mapping.

  SegataLab/panphlan#41 · Filter by author allen-zhan340 opened on Jan 23, 2024

• Problem with download reference genome from PanPhlAn pangenome database

  SegataLab/panphlan#40 · Filter by author shiangchiet opened on Nov 8, 2023

• panphlan_clean_pangenome.py isn't installed as part of the package

  SegataLab/panphlan#39 · Filter by author sterrettJD opened on Apr 10, 2023

• How to import roary pangenome results into panphlan?

  SegataLab/panphlan#38 · Filter by author yihandqx opened on Jan 6, 2023

• Index for manual {species}_pangenome.tsv

  SegataLab/panphlan#37 · Filter by author Hocnonsense opened on Aug 10, 2022

• Error running the sample a second time

  SegataLab/panphlan#35 · Filter by author namdeka opened on Dec 7, 2021
  1

• --func_annot

  SegataLab/panphlan#27 · Filter by author nick-youngblut opened on Feb 11, 2021
  6

• speed up panphlan_map.py with intervaltree?

  SegataLab/panphlan#26 · Filter by author nick-youngblut opened on Dec 20, 2020

• Error running panphlan_map

  SegataLab/panphlan#20 · Filter by author sanpande opened on Dec 17, 2020
  6

• NameError: name 'randint' is not defined during panphlan_profiling.py

  SegataLab/panphlan#5 · Filter by author fconstancias opened on May 28, 2020
  7