Issues

• Can DeepMod use to other single bacteria such as Pseudomonas aeruginosa? Which command can I use?

  WGLab/DeepMod#62 · Filter by author rhyer0418 opened on Jun 4, 2024
  2

• Any help appreciated with very cryptic errors

  WGLab/DeepMod#60 · Filter by author Arkadiy-Garber opened on Apr 7, 2023
  1

• No event in fast5 files.

  WGLab/DeepMod#59 · Filter by author Bin-Ma opened on Feb 14, 2023
  7

• Error!!! No Raw_reads/Signal data /Raw/Reads

  WGLab/DeepMod#58 · Filter by author bakeronit opened on Dec 7, 2022
  3

• methylation calling in non-CpG context (CHG and CHH)

  WGLab/DeepMod#57 · Filter by author yusmiatiliau opened on Nov 15, 2022
  2

• No events data in fast5

  WGLab/DeepMod#56 · Filter by author fire-activate opened on Jul 2, 2022
  5

• 7-feature description about an event for the Deepmod

  WGLab/DeepMod#54 · Filter by author Flower9618 opened on Feb 9, 2022
  1

• Cannot open fast5 or other errors

  WGLab/DeepMod#52 · Filter by author zmy24 opened on Jan 17, 2022
  5

• GPU recommendations?

  WGLab/DeepMod#51 · Filter by author chuanli11 opened on Jan 14, 2022
  1

• How to get the label of Chlamydomonas reinhardtii.

  WGLab/DeepMod#48 · Filter by author Bessyyi opened on Aug 30, 2021
  1

• what should I do if there are too many methylation sites detected?

  WGLab/DeepMod#47 · Filter by author chenchen-eng opened on Aug 26, 2021
  1

• Using DeepMod for other eukaryote species

  WGLab/DeepMod#46 · Filter by author brunorodrigueslab opened on Jul 19, 2021
  1

• What datasets can be used to run DeepMod

  WGLab/DeepMod#45 · Filter by author gottaMe opened on Jul 6, 2021
  8

• Error information for different fast5 files: Not in alignment sam 1095

  WGLab/DeepMod#44 · Filter by author Bessyyi opened on Jun 6, 2021
  1

• Error!!! No events data in 5aee471d-de7c-4310-9402-a2dcbe4e2286.fast5

  WGLab/DeepMod#43 · Filter by author 123chenshixin opened on Feb 22, 2021
  6

• Using deepmod on basecalled fast5 from latest guppy

  WGLab/DeepMod#42 · Filter by author hasindu2008 opened on Dec 9, 2020
  8

• Error!!! No Channel Info in /users/PAE57595_pass_barcode01_83605eaf_16.fast5

  WGLab/DeepMod#39 · Filter by author chenchen-eng opened on Sep 4, 2020
  7

• The result of NA12878 and HX1

  WGLab/DeepMod#35 · Filter by author Smart-zhi opened on Jun 30, 2020
  13

• Trained models and training DeepMod

  WGLab/DeepMod#34 · Filter by author pepebonet opened on Jun 12, 2020
  2

• No Fastq data in fast5

  WGLab/DeepMod#32 · Filter by author laguda-1996 opened on Apr 21, 2020
  6

• Reproducibility: NA12878 Dataset

  WGLab/DeepMod#15 · Filter by author cednotsed opened on Jun 25, 2019
  1