Issues

• wAnnovar, NextSeq VCF and dbSNP

  WGLab/doc-ANNOVAR#285 · Filter by author ABloodGenomics opened on Oct 2, 2026

• Bug report: table_annovar.pl generates incomplete annotated VCF (only one variant)

  WGLab/doc-ANNOVAR#284 · Filter by author mi3112 opened on May 20, 2026
  5

• Qestion about items in hg38_dbnsfp47a_interpro.txt

  WGLab/doc-ANNOVAR#281 · Filter by author Project4bz2023 opened on Nov 19, 2025
  1

• Annotation of a VCF using gene-disease data

  WGLab/doc-ANNOVAR#280 · Filter by author solcos opened on Oct 21, 2025
  2

• For exonic variants, ExonicFunc.refGene and AAChange.refGene in custom_multianno.txt are all UNKNOWN

  WGLab/doc-ANNOVAR#278 · Filter by author phlatphish opened on May 28, 2025
  1

• Get the latest hg19_refGene.txt from UCSC?

  WGLab/doc-ANNOVAR#277 · Filter by author wujianming604 opened on May 21, 2025
  1

• prefield not defined error when using allofus

  WGLab/doc-ANNOVAR#276 · Filter by author danielhmendoza01 opened on May 21, 2025

• invalid dbstrand information error, however, input is correctly formatted

  WGLab/doc-ANNOVAR#275 · Filter by author cjb-mercury opened on May 8, 2025
  1

• About SV allele annotation

  WGLab/doc-ANNOVAR#273 · Filter by author ghost opened on Mar 5, 2025

• How to annotate translocation varaints?

  WGLab/doc-ANNOVAR#272 · Filter by author DayTimeMouse opened on Jan 22, 2025
  2

• SNPS are invalid - the function of all "exon" variants is unknown

  WGLab/doc-ANNOVAR#271 · Filter by author ccyy11 opened on Jan 14, 2025

• The content of the .exonic_variant_function file is empty.

  WGLab/doc-ANNOVAR#270 · Filter by author leiwang567 opened on Jan 7, 2025
  7

• table_annovar vs annotate_variation output

  WGLab/doc-ANNOVAR#269 · Filter by author sup3rgiu opened on Dec 17, 2024
  3

• Is ANNOVAR able to annotate VCF files imputed by BEAGLE?

  WGLab/doc-ANNOVAR#268 · Filter by author Jiny000 opened on Dec 14, 2024
  1

• annotate_variation.pl failed for a kind of variant (INV from Pindel tool)

  WGLab/doc-ANNOVAR#266 · Filter by author kobolock opened on Nov 25, 2024
  1

• annovar annotates bacterial genome variation

  WGLab/doc-ANNOVAR#258 · Filter by author ChenDepp opened on Oct 8, 2024
  3

• Error: invalid dbstrand information

  WGLab/doc-ANNOVAR#257 · Filter by author yanwuanxin opened on Sep 26, 2024
  1

• how can I download /humandb/hg19_ALL.sites.2014_10.txt file througth ANNOVAR

  WGLab/doc-ANNOVAR#255 · Filter by author nanu4github opened on Sep 24, 2024
  1

• Please updata prepare_annovar_user.pl for clinvar_20240902.vcf.gz

  WGLab/doc-ANNOVAR#254 · Filter by author xiucz opened on Sep 6, 2024
  17

• one locus match two different transcripts of the same gene

  WGLab/doc-ANNOVAR#253 · Filter by author yanwuanxin opened on Sep 4, 2024
  3

• the base of AAChange.refGene is inconsistent with Ref/Alt

  WGLab/doc-ANNOVAR#252 · Filter by author yanwuanxin opened on Sep 4, 2024
  2

• Error for annotating chromosome and bp by rsID

  WGLab/doc-ANNOVAR#250 · Filter by author ruuhsu opened on Aug 15, 2024
  1

• base substitution I input is inconsistent with the calling result

  WGLab/doc-ANNOVAR#249 · Filter by author usernamenickname10 opened on Aug 3, 2024

• strand error assignment

  WGLab/doc-ANNOVAR#248 · Filter by author asilvestris84 opened on Jul 4, 2024
  1

• Update gnomAD database to v4.1 in ANNOVAR (some issues in v4.0)

  WGLab/doc-ANNOVAR#246 · Filter by author zouaghiyassine opened on May 24, 2024