Issues

• Input Files + Isolated Script Use

  akcorut/kGWASflow#47 · Filter by author doylemillard opened on Dec 10, 2025

• The environment of kmergwas

  akcorut/kGWASflow#46 · Filter by author f0llowyourheart opened on Nov 2, 2025

• Compatibility issue when using Micromamba instead of Conda for running kgwasflow on HPC cluster

  akcorut/kGWASflow#44 · Filter by author NouaraAID opened on May 20, 2025

• Error in rule generate_results_summary for test dataset

  akcorut/kGWASflow#43 · Filter by author alexzaccaron opened on Feb 8, 2025
  1

• libgfortran3 dependency

  akcorut/kGWASflow#42 · Filter by author rwhetten opened on Feb 7, 2025

• Error in rule spades --No module named 'distutils'-- | Error! The Snakemake workflow aborted.

  akcorut/kGWASflow#41 · Filter by author Dkyuan opened on Nov 11, 2024
  5

• How to run it offline? As my compute server can not link to github or any other web...

  akcorut/kGWASflow#40 · Filter by author zcl9602 opened on Oct 30, 2024

• Error on result/reads/../input_files.txt

  akcorut/kGWASflow#38 · Filter by author ChristianDina opened on Sep 11, 2024

• How to read results/kmers_count/<sample>/kmers_with_strand table

  akcorut/kGWASflow#37 · Filter by author VanOverbeeke opened on Aug 20, 2024

• Error in rule extract_kmersGWAS

  akcorut/kGWASflow#36 · Filter by author ChristianDina opened on Jul 15, 2024

• Results directories (qc and reads)

  akcorut/kGWASflow#35 · Filter by author ChristianDina opened on Jul 11, 2024

• Something about string expected and not found.

  akcorut/kGWASflow#34 · Filter by author ChristianDina opened on Jun 19, 2024
  1

• MissingInputException in rule all

  akcorut/kGWASflow#33 · Filter by author Jose-LSP opened on Apr 30, 2024
  3

• Increase k-mer size above 31

  akcorut/kGWASflow#31 · Filter by author VanOverbeeke opened on Mar 7, 2024
  3

• Error in rule kmc_canonical

  akcorut/kGWASflow#30 · Filter by author spaddys opened on Feb 13, 2024
  7

• Questionable FASTQ format in test dataset

  akcorut/kGWASflow#29 · Filter by author VanOverbeeke opened on Jan 29, 2024

• Error at __rule_extract_kmersGWAS

  akcorut/kGWASflow#28 · Filter by author SakaMax opened on Dec 30, 2023

• Error in rule merge_kmers for the test.

  akcorut/kGWASflow#27 · Filter by author LanLBio opened on Dec 26, 2023
  7

• Error in rule multiqc, missing package imp

  akcorut/kGWASflow#26 · Filter by author cedarwarman opened on Oct 26, 2023
  10

• Manhattan plots fail

  akcorut/kGWASflow#25 · Filter by author Ax3man opened on Oct 12, 2023
  4

• Error in rule run_kmers_gwas

  akcorut/kGWASflow#24 · Filter by author DavideGue opened on Oct 12, 2023
  8

• is full snakemake required? or would snakemake-minimal suffice?

  akcorut/kGWASflow#17 · Filter by author ctb opened on Aug 24, 2023
  2