Commits

Commits on Aug 19, 2026

Release v0.12.3
althonos
committed
956c542
Fix syntax error in `HMM.emit_alignment` stub in plan7.pyi (#105)
aretasg
authored
00d2b9d

Commits on Aug 13, 2026

Commits on May 27, 2026

Fix broken download badges in `README.md` [ci skip]
althonos
committed
0dd3258

Commits on May 12, 2026

Bump AUR deployment Action in `package.yml` [ci skip]
althonos
committed
20e886f
Release v0.12.1
althonos
committed
620d7e2
Add missing properties to `Alphabet` type hints [ci skip]
althonos
committed
9a40e5f
Fix `HMM.emit_alignment` generating a text rather than digital MSA
althonos
committed
6653788
Bump ARM runner image in `test.yml` Actions workflow [ci skip]
althonos
committed
6c9b88c
Fix documentation of fused methods [ci skip]
althonos
committed
f36af16
Improve examples and documentation for `HMM` and `Profile` emit methods
althonos
committed
ca8187f

Commits on May 10, 2026

Commits on May 9, 2026

Commits on May 8, 2026

Add Cython headers for `emit.c` functions of HMMER
althonos
committed
4bb1ba1

Commits on Mar 17, 2026

Fix broken citations badges in `README.md` [ci skip]
althonos
committed
26a48f5

Commits on Feb 27, 2026

Add guide section about bitscores, P-values and E-values [ci skip]
althonos
committed
3d91f92

Commits on Feb 26, 2026

Remove `Profile.transition_scores` due to memory leak
althonos
committed
839fb9e
Add `allocM` property to `Profile` and `OptimizedProfile`
althonos
committed
8b7e3a2
Implement `Sequence.L` property to simplify code
althonos
committed
aaf4721

Commits on Feb 25, 2026

Update `PKGBUILD` to use new ABI3 wheels
althonos
committed
b3a550f

Commits on Feb 11, 2026

Add new `Matrix.flatten` method to get a `Vector` over the whole buffer
althonos
committed
c76a02f

Commits on Jan 27, 2026

Fix `SequenceFile.__init__` crashing on opening SSI indices for gzip-compressed files
althonos
committed
7e849d8

Commits on Jan 23, 2026

Commits on Jan 22, 2026

Fix outdated example in `README.md` [ci skip]
althonos
committed
23b9bc0
Fix `CHANGELOG.md` release notes [ci skip]
althonos
committed
72a5c64
Release v0.12.0
althonos
committed
cdf6a00
Disable `SequenceFile.indexed` and `MSAFile.indexed` on Windows as seeking is unavailable
althonos
committed
fc7305b
Fix issues with return flow in some `esl_dsqdata.c` functions
althonos
committed
e734f84
Fix issues with invalid formatting in `SequenceFile.indexed` and `MSAFile.indexed`
althonos
committed
2f14943