Issues

• HGVSDataNotAvailableError: "Alignment is incomplete" when mapping NC_000003.11:g.72428190C>T to NM_012234.6

  biocommons/uta#281 · Filter by author cassiemk opened on Jul 2, 2026
  4

• Add MANE status annotations to transcipt accessions

  enhancement
  biocommons/uta#278 · Filter by author jsstevenson opened on Mar 23, 2026

• Add HGNC IDs to genes table

  enhancement
  biocommons/uta#277 · Filter by author jsstevenson opened on Mar 23, 2026

• Add table descriptions

  Task

  biocommons/uta#276 · Filter by author jsstevenson opened on Mar 7, 2026
  

• 302 Found redirect response during installation

  bug
  biocommons/uta#274 · Filter by author markgene opened on Dec 11, 2025
  5

• Publish hashes for latest UTA releases

  biocommons/uta#271 · Filter by author anandsahuja opened on Jul 3, 2025

• Question on CIGAR strings in UTA

  biocommons/uta#266 · Filter by author budsonjelmont opened on Oct 21, 2024

• Database download as JSON?

  enhancement
  biocommons/uta#265 · Filter by author DGMichael opened on Oct 12, 2024
  1

• Erroneous/duplicative HGNC names ZHX1-C8ORF76 and ZHX1-C8orf76

  bug
  biocommons/uta#264 · Filter by author jsstevenson opened on Oct 8, 2024

• Consider standardized schema for transcripts

  keep alive
  biocommons/uta#241 · Filter by author holtgrewe opened on May 4, 2023
  3

• Add support for the telomer-to-telomer assembly (T2T)

  keep alive
  biocommons/uta#234 · Filter by author andreasprlic opened on Jul 31, 2021
  4

• ENSEMBL transcripts not versioned

  keep alive
  biocommons/uta#233 · Filter by author ahwagner opened on Jun 9, 2021
  8

• RFC: Should we migrate to fully-justified alignments?

  keep alive
  biocommons/uta#222 · Filter by author reece opened on Sep 10, 2019
  4

• HGNC Values are Missing on Some Transcripts

  bug
  biocommons/uta#217 · Filter by author akeeeshi opened on Mar 19, 2019
  7

• am37.c_to_g(hp.parse_hgvs_variant('NM_005117.2:c.295C>T')) fails with Alignment is incomplete.

  bug
  biocommons/uta#216 · Filter by author jfreidin opened on Jan 18, 2019
  4

• uta schema overhaul

  keep alive
  biocommons/uta#204 · Filter by author reece opened on Mar 14, 2017
  4

• Use entrez gene_ids rather than symbols to link genes and transcripts

  keep alive
  biocommons/uta#203 · Filter by author reece opened on Mar 8, 2017
  4

• Don't align transcripts with different numbers of exons

  enhancement
  biocommons/uta#195 · Filter by author reece opened on Sep 28, 2015 · 0.3.0
  4

• uta_20150827 is missing ENSP accessions and sequences

  bug
  biocommons/uta#194 · Filter by author reece opened on Sep 16, 2015 · 0.2.x
  2

• drop sqlalchemy, rework creation + loading

  enhancement
  biocommons/uta#187 · Filter by author reece opened on Jun 18, 2015 · 0.3.0
  1

• Add assembly data to UTA

  enhancement
  biocommons/uta#174 · Filter by author reece opened on May 26, 2015 · 0.3.0

• build UTA REST interface / refactor UTA client packaging

  enhancement
  biocommons/uta#164 · Filter by author reece opened on Jun 15, 2014 · 0.3.0
  3

• add min,max bounds to transcript and gene summaries

  enhancement
  biocommons/uta#162 · Filter by author reece opened on Jun 13, 2014 · 0.3.0
  1

• enable multiple alignments per <tx,ref,method>

  enhancement
  biocommons/uta#160 · Filter by author reece opened on May 24, 2014 · 0.3.0
  1

• implement stable views for common uses (particularly hgvs)

  enhancement
  biocommons/uta#155 · Filter by author reece opened on Feb 24, 2014 · 0.3.0