Issues

• pip install deepcpg does not install tensorflow.

  cangermueller/deepcpg#43 · Filter by author shawarden opened on Feb 8, 2023

• pip install deepcpg => bad interpreter: /anaconda3/envs/deepcpg/bin/python: no such file or directory

  cangermueller/deepcpg#42 · Filter by author shawarden opened on Nov 3, 2022

• Negative strand index input

  cangermueller/deepcpg#41 · Filter by author yxwucq opened on Sep 19, 2022

• Recommendations for using in Tumor Normal scenario

  cangermueller/deepcpg#40 · Filter by author harish0201 opened on Jun 28, 2022

• Can't calculate the pair potential

  cangermueller/deepcpg#39 · Filter by author 1920993165 opened on May 31, 2021

• keras/tensorflow version incompatibility

  cangermueller/deepcpg#38 · Filter by author sameelab opened on May 10, 2021

• keras / tensorflow version compatibility

  cangermueller/deepcpg#37 · Filter by author rekham1077 opened on Jun 30, 2020
  2

• Fails CpG module training

  cangermueller/deepcpg#36 · Filter by author yoramzarai opened on Apr 22, 2020

• CpG sites in the negative strand

  cangermueller/deepcpg#33 · Filter by author yasin-chop opened on Sep 30, 2019
  3

• Models in the zoo are not accessible

  cangermueller/deepcpg#30 · Filter by author yasin-chop opened on Sep 25, 2019

• impute CpG values for gene by cell matrix

  cangermueller/deepcpg#29 · Filter by author shengyongniu opened on Sep 3, 2019
  1

• Unable to train joint model from pretrained cpg and dna model with tensorflow backend

  cangermueller/deepcpg#28 · Filter by author snajder-r opened on Aug 30, 2019
  1

• GPU utility in training only about 25%

  cangermueller/deepcpg#27 · Filter by author snajder-r opened on Aug 6, 2019
  1

• This software can only predict the methylation status not the exact methylation level right

  cangermueller/deepcpg#26 · Filter by author sixone11 opened on Jul 31, 2019

• Can you provide pre-trained models from the DeepCpG model zoo

  cangermueller/deepcpg#25 · Filter by author Chamemee opened on Jan 31, 2019

• CpG profiles file not found

  cangermueller/deepcpg#24 · Filter by author pegahmavaee opened on Dec 19, 2018
  4

• PCA of learnt motifs by DeepCpG

  cangermueller/deepcpg#23 · Filter by author janewangsmile opened on Dec 11, 2018