Issues

• Problem with inference of parameters

  catavallejos/BASiCS#288 · Filter by author PieterVerhagen opened on Apr 9, 2026
  3

• Add data input check to ensure expression counts are integers

  catavallejos/BASiCS#280 · Filter by author catavallejos opened on Sep 21, 2023
  1

• comparing single cell and single nuclei datasets

  catavallejos/BASiCS#279 · Filter by author binyaminZ opened on Dec 29, 2022
  3

• Edit Summary so that merged tables can be provided

  catavallejos/BASiCS#272 · Filter by author catavallejos opened on Nov 26, 2022

• BASiCS_DenoisedCounts requires no further data normalisation?

  catavallejos/BASiCS#264 · Filter by author binyaminZ opened on Sep 5, 2022
  7

• Intuition for noise parameter

  catavallejos/BASiCS#237 · Filter by author binyaminZ opened on May 25, 2022
  5

• Theta doesn't converge

  catavallejos/BASiCS#235 · Filter by author binyaminZ opened on Mar 25, 2022
  14

• Improve error documentation in BASiCS_PlotVG

  catavallejos/BASiCS#221 · Filter by author catavallejos opened on Dec 17, 2020

• EB prior for phi?

  catavallejos/BASiCS#215 · Filter by author catavallejos opened on Oct 30, 2020

• Cumulative plots for diagnostics?

  catavallejos/BASiCS#214 · Filter by author catavallejos opened on Oct 26, 2020
  2

• Threads needs to be documented in BASiCS_MCCM

  catavallejos/BASiCS#207 · Filter by author catavallejos opened on Sep 30, 2020

• Read BatchInfo directly from colData ?

  catavallejos/BASiCS#206 · Filter by author catavallejos opened on Sep 29, 2020
  2

• Exclusion based on ESS in BASiCS_TestDE

  catavallejos/BASiCS#201 · Filter by author catavallejos opened on Aug 20, 2020
  1

• Move from cowplot to patchwork

  catavallejos/BASiCS#200 · Filter by author catavallejos opened on Aug 19, 2020
  1

• In BASiCS_TestDE change defaults for Plot and PlotOffset to FALSE

  catavallejos/BASiCS#197 · Filter by author catavallejos opened on Aug 10, 2020

• Add option to exclude spike-ins from BASiCS_DenoisedCounts

  catavallejos/BASiCS#196 · Filter by author catavallejos opened on Aug 7, 2020

• Move repository to VallejosGroup/BASiCS ?

  catavallejos/BASiCS#195 · Filter by author catavallejos opened on Aug 6, 2020

• Deprecate BASiCS_VarThresholdSearchVG ?

  catavallejos/BASiCS#191 · Filter by author catavallejos opened on Aug 5, 2020

• Exclude genes with low ESS from BASiCS_DetectHVG/LVG?

  catavallejos/BASiCS#179 · Filter by author catavallejos opened on May 28, 2020
  2

• Add EB to the documentation and vignette

  catavallejos/BASiCS#177 · Filter by author catavallejos opened on May 25, 2020

• Improve convergence diagnostics

  catavallejos/BASiCS#176 · Filter by author catavallejos opened on May 25, 2020
  1

• Alternative to newBASiCS_Data?

  catavallejos/BASiCS#175 · Filter by author catavallejos opened on May 21, 2020
  7

• Add option to exclude spike-in in denoised counts / rates

  catavallejos/BASiCS#167 · Filter by author catavallejos opened on Mar 10, 2020

• BASiCS_TestDE gets stuck when Offset = FALSE

  catavallejos/BASiCS#166 · Filter by author catavallejos opened on Mar 10, 2020

• Some tests for parameter estimation use non-zero tolerance

  catavallejos/BASiCS#160 · Filter by author catavallejos opened on Feb 16, 2020