Issues

ValueError: invalid error value specified (Pandas 2.0+ Incompatibility)
cmap/cmapPy#89 · opened on Feb 14, 2026
https://clue.io/cmapPy/index.html Page not found.
cmap/cmapPy#88 · opened on Nov 7, 2024
Assertion Error occuring on "subsetting GCToo instances" part
cmap/cmapPy#86 · opened on Jun 13, 2024
Parse isnt working when trying to read in cs_sig.gtcx from query results
cmap/cmapPy#85 · opened on Dec 7, 2023
API Use Cases
cmap/cmapPy#84 · opened on Nov 30, 2023
pypi release
cmap/cmapPy#81 · opened on Sep 5, 2023
1
write_gct adds in the index column
cmap/cmapPy#80 · opened on Aug 21, 2023
Cannot write back GCT file that has been parsed
cmap/cmapPy#78 · opened on Aug 29, 2022
1
Bug .GCT written by cmapPy on Windows have inconsistent line endings
cmap/cmapPy#77 · opened on Jul 13, 2022
4
Solving environment: failed
cmap/cmapPy#74 · opened on Aug 20, 2021
Subsetting picks wrong dimension to subset over first
cmap/cmapPy#71 · opened on Apr 23, 2021
1
Error in parsing
cmap/cmapPy#70 · opened on Mar 24, 2021
GCTX parsing is not thread safe.
cmap/cmapPy#68 · opened on Jan 19, 2021
Error during parsing
cmap/cmapPy#67 · opened on Nov 13, 2020
3
Cmap tutorial IPython notebook doesn't open in the browser
cmap/cmapPy#65 · opened on Oct 18, 2020
reading gctx from a non-fs file object
cmap/cmapPy#64 · opened on Apr 8, 2020
1
parse_gctx takes too much memory when we inquire specific columns and rows
cmap/cmapPy#63 · opened on Jan 15, 2020
2
mismatch between metadata and gctx
cmap/cmapPy#62 · opened on Dec 12, 2019
2
how I create a conda environment for cmapPy and python 3
cmap/cmapPy#57 · opened on Jun 10, 2019
1
code to compute connectivity score
cmap/cmapPy#39 · opened on May 24, 2018
3
parse_gctx: don't sort returned values
cmap/cmapPy#36 · opened on Mar 30, 2018
6