Issues

• Make parameters traceable by using params

  epigen/MrBiomics#85 · Filter by author sreichl opened on Jul 28, 2026
  1

• Upgrade Snakemake & SLURM executor plugin to latest versions

  epigen/MrBiomics#84 · Filter by author sreichl opened on Jul 28, 2026

• Roadmap v1.1.0

  epigen/MrBiomics#83 · Filter by author sreichl opened on Jul 28, 2026

• Update and test QuickStart to use the latest enrichment analysis version

  epigen/MrBiomics#82 · Filter by author sreichl opened on Jun 7, 2026
  

• Apply best practices across all modules

  epigen/MrBiomics#81 · Filter by author sreichl opened on May 9, 2026
  1

• add a QUICKSTART section to the start of every module

  epigen/MrBiomics#80 · Filter by author sreichl opened on May 9, 2026

• add citation info to README

  epigen/MrBiomics#79 · Filter by author sreichl opened on May 9, 2026

• Refactor Sustainability page

  epigen/MrBiomics#78 · Filter by author sreichl opened on Apr 13, 2026
  3

  

• Upgrade wiki

  epigen/MrBiomics#77 · Filter by author sreichl opened on Apr 13, 2026
  

• MacOS/ARM64 wiki page

  Task

  epigen/MrBiomics#76 · Filter by author sreichl opened on Apr 7, 2026
  1

• add automated testing to all modules (GitHub action)

  epigen/MrBiomics#74 · Filter by author sreichl opened on Mar 23, 2026

• lint and format all modules and setup GitHub check

  epigen/MrBiomics#73 · Filter by author sreichl opened on Mar 22, 2026

• create FAQ section on wiki

  epigen/MrBiomics#72 · Filter by author sreichl opened on Dec 17, 2025
  2

• add example configurations, annotations, data and results to all modules

  epigen/MrBiomics#70 · Filter by author sreichl opened on Nov 2, 2025
  2

• Benchmarks

  epigen/MrBiomics#69 · Filter by author sreichl opened on Nov 2, 2025
  2

• Figures v3

  epigen/MrBiomics#68 · Filter by author sreichl opened on Nov 1, 2025
  2

  

• Test recipes

  epigen/MrBiomics#66 · Filter by author sreichl opened on Oct 13, 2025
  8

  

• Recipe improvements

  Feature

  epigen/MrBiomics#65 · Filter by author sreichl opened on Oct 7, 2025
  2

  

• switch from PNG to PDF

  Feature

  epigen/MrBiomics#64 · Filter by author sreichl opened on Oct 1, 2025
  1

• Supplementary Figures

  epigen/MrBiomics#59 · Filter by author bednarsky opened on Aug 21, 2025
  1

  

• scCRISPR-seq Analysis Recipe

  epigen/MrBiomics#47 · Filter by author sreichl opened on Apr 15, 2025
  9

  

• Recommended way to adapt computational resources for rules

  epigen/MrBiomics#46 · Filter by author bednarsky opened on Apr 7, 2025
  10

• Logo

  epigen/MrBiomics#45 · Filter by author sreichl opened on Apr 3, 2025
  6

  

• create JSON schema for all module configs

  enhancement
  epigen/MrBiomics#42 · Filter by author sreichl opened on Dec 22, 2024
  3

• scRNA-seq Analysis Recipe

  documentation
  epigen/MrBiomics#38 · Filter by author sreichl opened on Dec 3, 2024
  9