Issues

• High resolution causes error - Questions about interpretation of results

  hoffmangroup/segway#182 · Filter by author ChelseyLin3 opened on Jun 27, 2024
  1

• Doc suggestion

  hoffmangroup/segway#180 · Filter by author wsnoble opened on May 17, 2024
  6

• emission probability heatmap

  hoffmangroup/segway#167 · Filter by author YichaoOU opened on Mar 28, 2023
  5

• Using continuous and discrete tracks

  hoffmangroup/segway#161 · Filter by author corinsexton opened on Feb 24, 2022
  2

• --trainable-params and -p equivalent option not available for annotate or posterior

  hoffmangroup/segway#156 · Filter by author EricR86 opened on Oct 28, 2021

• Large verbosity numbers for "--verbose" breaks exisiting parsing of viterbi output

  hoffmangroup/segway#155 · Filter by author EricR86 opened on Oct 28, 2021
  

• Meanings of segment names like 13_Quiescent?

  hoffmangroup/segway#150 · Filter by author amadeusX opened on Apr 26, 2021
  2

• Segway produces annotations that are not stictly valid BED files

  hoffmangroup/segway#149 · Filter by author EricR86 opened on Feb 2, 2021
  1

• Error while running segway train : "can't tie one track in multiple groups" and "Set of training windows is empty"

  hoffmangroup/segway#148 · Filter by author Cheryn-A opened on Oct 29, 2020
  3

• Support for IBM Spectrum LSF

  hoffmangroup/segway#142 · Filter by author EricR86 opened on Jul 9, 2020
  1

• Training windows segway train phase

  bugmajor
  hoffmangroup/segway#137 · Filter by author EricR86 opened on Mar 20, 2020

• Disabling Gaussian splitting in single-Gaussian case

  bugminor
  hoffmangroup/segway#133 · Filter by author EricR86 opened on Feb 19, 2019

• Cannot create observations before training and annotation

  enhancementminor
  hoffmangroup/segway#132 · Filter by author EricR86 opened on Dec 14, 2018

• Touchstone exists for simplereverse but is never checked

  bugminor
  hoffmangroup/segway#131 · Filter by author EricR86 opened on Dec 13, 2018

• Simpleseg jobs.instance.tab ocassionally has out of order output

  bugtrivial
  hoffmangroup/segway#130 · Filter by author EricR86 opened on Dec 10, 2018
  1

• Segway with EGBR

  enhancementtrivial
  hoffmangroup/segway#129 · Filter by author EricR86 opened on Sep 5, 2018

• Stale file handle error

  bugmajor
  hoffmangroup/segway#128 · Filter by author EricR86 opened on Jun 29, 2018
  3

• Give users controls over track weights.

  majorproposal
  hoffmangroup/segway#127 · Filter by author EricR86 opened on Jun 25, 2018
  2

• Warn users when the number of windows exceed a threshold

  enhancementminor
  hoffmangroup/segway#124 · Filter by author EricR86 opened on Feb 21, 2018
  5

• Setting hard memory limit constraints fails on certain systems

  bugmajor
  hoffmangroup/segway#123 · Filter by author EricR86 opened on Jan 30, 2018

• save_gmtk_input() hides exception raised by genomedata

  enhancementtrivial
  hoffmangroup/segway#122 · Filter by author EricR86 opened on Jan 26, 2018
  1

• --include-coord does not verify if the coordinates are valid before running Segway

  enhancementtrivial
  hoffmangroup/segway#121 · Filter by author EricR86 opened on Jan 10, 2018
  2

• Fatal fdiffact1 error when using --semisupervised and --validation-coords together

  bugmajor
  hoffmangroup/segway#120 · Filter by author EricR86 opened on Jan 3, 2018
  1

• --semisupervised mode fails when no tracks are specified

  bugminor
  hoffmangroup/segway#119 · Filter by author EricR86 opened on Dec 20, 2017

• Test segway_layer_bigbed fails due to difference in bigBed files

  bugminor
  hoffmangroup/segway#118 · Filter by author EricR86 opened on Nov 16, 2017