Issues

• Get """ERROR: No entry for file ending in '_genomic.fna.gz'""" error !

  kblin/ncbi-genome-download#240 · Filter by author Nilad opened on Mar 17, 2026

• Empty taxid files downloads everything

  kblin/ncbi-genome-download#238 · Filter by author drboothtj opened on Jan 13, 2026
  1

• ncbi-genome-download works with refseq for me, but not genbank

  kblin/ncbi-genome-download#234 · Filter by author Laura-Alex opened on Nov 19, 2024
  1

• file type requested not found in NCBI

  kblin/ncbi-genome-download#232 · Filter by author mvalvano opened on Aug 27, 2024
  1

• Failing during checking assembly?

  question
  kblin/ncbi-genome-download#224 · Filter by author Thomieh73 opened on Jun 13, 2024
  1

• Host Link Could be Incorrect

  not shipped yet
  kblin/ncbi-genome-download#223 · Filter by author Mohammed-Quraishi opened on Mar 12, 2024
  2

• /path error when running ncbi-genome-download in a shell script

  need info
  kblin/ncbi-genome-download#216 · Filter by author KinSimon96 opened on Sep 19, 2023
  1

• gimme_taxa.py / ngd mismatched format

  not shipped yet
  kblin/ncbi-genome-download#215 · Filter by author zreitz opened on Aug 27, 2023
  2

• Collect author info from other ncbi-genome-download contributors.

  enhancement
  kblin/ncbi-genome-download#214 · Filter by author kblin opened on Jul 28, 2023

• Can't download unclassified organisms

  kblin/ncbi-genome-download#206 · Filter by author MatthieuBoulinguiez opened on May 10, 2023

• Number of genomes downloaded not corresponding to number of entries

  kblin/ncbi-genome-download#205 · Filter by author arfaiq opened on Apr 16, 2023
  1

• Check if accessions has CDS?

  kblin/ncbi-genome-download#203 · Filter by author ElinorSterner opened on Feb 21, 2023
  1

• Option for metadata file only

  kblin/ncbi-genome-download#202 · Filter by author Ahmed-Shibl opened on Jan 31, 2023
  1

• Feature request: filter by length of sequence

  kblin/ncbi-genome-download#199 · Filter by author Tylersuard opened on Dec 17, 2022

• Databases version

  kblin/ncbi-genome-download#197 · Filter by author SergeyBaikal opened on Oct 4, 2022

• Missing genomes when downloading with genura

  kblin/ncbi-genome-download#196 · Filter by author WEIGUO93 opened on Sep 22, 2022

• .I use commond line" ncbi-genome-download --formats fasta viral" to load refseq virus,it is 1847 complete squeuces in total,is it right?

  kblin/ncbi-genome-download#195 · Filter by author qinjunjun opened on Apr 18, 2022
  3

• Error while downloading genera

  kblin/ncbi-genome-download#194 · Filter by author sanyalab opened on Apr 11, 2022

• Downloading of cDNA, GFF3, and EST sequences

  kblin/ncbi-genome-download#193 · Filter by author sanyalab opened on Apr 8, 2022

• newB question - can I get the "reference" genome for a tax ID?

  kblin/ncbi-genome-download#192 · Filter by author RichardCorbett opened on Mar 22, 2022

• Download problem

  kblin/ncbi-genome-download#191 · Filter by author XLOXL opened on Mar 22, 2022
  2

• ERROR: No downloads matched your filter. Please check your options.

  kblin/ncbi-genome-download#174 · Filter by author jolespin opened on Sep 29, 2021
  1

• Pseudogenes download

  kblin/ncbi-genome-download#143 · Filter by author gkoulouras opened on Apr 4, 2021
  2

• Filenames with genus, species and strain?

  kblin/ncbi-genome-download#142 · Filter by author johanneswerner opened on Jan 29, 2021

• Reference sequence

  kblin/ncbi-genome-download#141 · Filter by author kate-simonova opened on Jan 21, 2021