Make protein macro species-specific

Author: klmr

thesis.cls

@@ -486,10 +486,11 @@
 
 \newcommand*\gene@hsa[1]{\textsc{\MakeTextLowercase{\textit{#1}}}}
 \newcommand*\gene@mmu[1]{\textit{#1}}
-
 \newcommand*\gene[2]{\csuse{gene@#1}{#2}}
 
-\newcommand*\protein[1]{\textrm{\textsc{\MakeTextLowercase{#1}}}}
+\newcommand*\protein@hsa[1]{\textrm{\textsc{\MakeTextLowercase{#1}}}}
+\newcommand*\protein@mmu[1]{\textrm{\textsc{\MakeTextLowercase{#1}}}}
+\newcommand*\protein[2]{\csuse{protein@#1}{#2}}
 
 % Formatting of biological sequences
 

trna-development.tex

@@ -101,14 +101,14 @@ \section{Protein-coding gene expression changes dynamically during mouse
 illustrated by looking at individual gene expression counts, plotted against
 their genomic location (\cref{fig:mrna-expression-change}). For example, in the
 liver we can confirm the functional relevance of apolipoprotein B
-(\protein{APOB}) as the primary carrier of lipoproteins, which becomes
+(\protein{mmu}{APOB}) as the primary carrier of lipoproteins, which becomes
 increasingly relevant as the organ shifts to metabolism \citep{Knott:1986}.
 Similarly, \mrna gene expression changes highlight the role of α-fetoproteine
-(\protein{AFP}) as the fetal version of serum albumin (\cref{fig:apob-afp})
+(\protein{mmu}{AFP}) as the fetal version of serum albumin (\cref{fig:apob-afp})
 \citep{Chen:1997}. In the brain, shifts can be seen in the activity of the
-neural \tf \protein{FOXP2}, the expression of which continuously decreases, and
-in calmodulin (\protein{CALM1}), where transcription increases after birth
-\citep{Tsui:2013,Huang:2011}.
+neural \tf \protein{mmu}{FOXP2}, the expression of which continuously decreases,
+and in calmodulin (\protein{mmu}{CALM1}), where transcription increases after
+birth \citep{Tsui:2013,Huang:2011}.
 
 \textfloat{mrna-expression-change}{spill}{%
     \centering