Issues

Segmentation fault (core dumped) when split very large fastq.gz
lh3/seqtk#224 · opened on Sep 16, 2025
3
seqtk telo Add possibility for usage of fractions in penalty
lh3/seqtk#222 · opened on May 9, 2025
seqtk sample Long-Form Arguments
lh3/seqtk#221 · opened on May 2, 2025
seqtk sample ignores interleaved reads
lh3/seqtk#217 · opened on Oct 4, 2024
seqtk telo can't find results with my data
lh3/seqtk#215 · opened on Jun 26, 2024
6
Error
lh3/seqtk#214 · opened on May 26, 2024
1
sample command silently produces incorrect empty reads
lh3/seqtk#213 · opened on May 7, 2024
1
subseq silent fail on malformatted fq
lh3/seqtk#212 · opened on May 6, 2024
CutN fails when sequence begins with Ns
lh3/seqtk#211 · opened on Apr 19, 2024
converting fasta to fastq
lh3/seqtk#209 · opened on Mar 22, 2024
2
DNS Resolution Warning with Singularity Container
lh3/seqtk#207 · opened on Feb 19, 2024
seqtk hpc input.fq ignores the quality and converts to .fa
lh3/seqtk#205 · opened on Jan 15, 2024
seqtk comp count CpG
lh3/seqtk#202 · opened on Jul 26, 2023
seqtk telo -m works partially with 8mer wasp telomere
lh3/seqtk#201 · opened on Jun 9, 2023
5
output file contains only one amino acid
lh3/seqtk#200 · opened on Jan 31, 2023
1
subseq empty output
lh3/seqtk#189 · opened on Apr 12, 2022
feature request: ability to pass through all reads by specifying sample '1.0'
lh3/seqtk#188 · opened on Feb 13, 2022
cutN penalty to identify all Ns?
lh3/seqtk#187 · opened on Jan 27, 2022
Fail to open input file/stream
lh3/seqtk#186 · opened on Dec 29, 2021
1
seqtk hrun bin size
lh3/seqtk#185 · opened on Dec 16, 2021
2
error running seqtk with parallel
lh3/seqtk#177 · opened on Jul 2, 2021
1
Error: Unable to locate package seqtk
lh3/seqtk#176 · opened on Jul 1, 2021
1
Packaging
lh3/seqtk#175 · opened on Jun 14, 2021
Extract sequences in regions doesn't work?
lh3/seqtk#174 · opened on Jun 3, 2021
Hi
lh3/seqtk#172 · opened on May 6, 2021
2