Issues

• FASTQ-API read names are split using spaces only - what about tabs ?

  lmdu/pyfastx#98 · Filter by author sergpolly opened on Aug 13, 2026
  1

• Feature request: linux-aarch64 wheels on PyPI

  lmdu/pyfastx#97 · Filter by author govinda-kamath opened on Jul 21, 2026
  2

• Bug in pyfastx handling long file names

  lmdu/pyfastx#93 · Filter by author edwhisnant opened on Apr 29, 2026
  1

• __next__ method on Sequence crashes python

  lmdu/pyfastx#92 · Filter by author theAeon opened on Jan 31, 2026
  2

• Error in determining sequence boundaries

  lmdu/pyfastx#91 · Filter by author linhong-bgi opened on Sep 2, 2025
  8

• Intermittent Pyfastx Errors (corrupted size vs. prev_size, free(): invalid next size (fast))

  lmdu/pyfastx#88 · Filter by author JeanMainguy opened on Mar 17, 2025
  2

• close for Fasta object

  lmdu/pyfastx#87 · Filter by author diekhans opened on Feb 4, 2025
  2

• Support of Python 3.12/3.13 is suggested by badges in README, but not mentioned in README explicitly

  lmdu/pyfastx#86 · Filter by author corneliusroemer opened on Jan 30, 2025
  3

• How to read two fastq files simultaneously?

  lmdu/pyfastx#82 · Filter by author yc-pro opened on Aug 9, 2024
  1

• Segmentation Fault (Core dumped)

  lmdu/pyfastx#81 · Filter by author casparbein opened on Jul 26, 2024
  2

• Full Fasta info object without index building

  lmdu/pyfastx#72 · Filter by author oschwengers opened on Sep 19, 2023
  1

• How to get antisense sequence from any strings ?

  lmdu/pyfastx#69 · Filter by author galaxy001 opened on Aug 9, 2023
  1

• Segmentation fault using .composition on each contig

  lmdu/pyfastx#67 · Filter by author nextgenusfs opened on Jun 28, 2023
  2

• SystemError: <class 'Fasta'> returned a result with an error set; on loading gzipped fasta

  lmdu/pyfastx#63 · Filter by author jolo2486 opened on Mar 22, 2023
  2

• Unable to index gzipped fasta file by name: KeyError: 'chrY does not exist in fasta file'

  lmdu/pyfastx#62 · Filter by author jolo2486 opened on Mar 22, 2023
  2

• Import Error

  lmdu/pyfastx#60 · Filter by author jpizzollo opened on Feb 27, 2023
  3

• [Feature Request] Get barcodes from Fastx function

  lmdu/pyfastx#59 · Filter by author hotsoupisgood opened on Feb 2, 2023
  1

• [Feature Request] Read from stdin option

  lmdu/pyfastx#48 · Filter by author jolespin opened on Sep 2, 2022
  3

• Support xz-compressed files

  lmdu/pyfastx#46 · Filter by author joverlee521 opened on Aug 24, 2022
  2

• streaming multiple fastq files at the same time?

  lmdu/pyfastx#42 · Filter by author Irenexzwen opened on Apr 28, 2022
  1

• some sequences are missing in pyfastx.Fasta object

  lmdu/pyfastx#41 · Filter by author dawnmy opened on Mar 12, 2022
  4

• why it append "phred" behind read.name

  lmdu/pyfastx#38 · Filter by author wllzhang opened on Jan 3, 2022
  1

• Multiprocessing with apply_async does not work

  lmdu/pyfastx#33 · Filter by author sanjaysrikakulam opened on Jun 23, 2021
  6

• The sample function with option --sequential-read went wrong

  lmdu/pyfastx#28 · Filter by author YanCCscu opened on Dec 25, 2020
  1

• Filter fastq file (performance)

  lmdu/pyfastx#22 · Filter by author Maarten-vd-Sande opened on Nov 29, 2020
  1