Issues

• vcf2maf failing to populated CAADD, REVEL, MutationTaster, Polyphenscores

  mskcc/vcf2maf#381 · Filter by author JacobAyembilla opened on Jun 20, 2026

• It looks like vcf2maf cannot work with Manta (MantaBND )variants and the error given is confusing

  mskcc/vcf2maf#376 · Filter by author Manuel-DominguezCBG opened on Nov 20, 2025
  1

• ensg_to_entrez_id_map_ensembl_feb2014.tsv erroneously assigns Entrez ID

  mskcc/vcf2maf#341 · Filter by author gjoseph15 opened on Mar 21, 2023

• Structural variant without CHR2

  mskcc/vcf2maf#321 · Filter by author j-hudecek opened on Jul 15, 2022

• n_alt_count and n_ref_count corrupted at recurrent sites in maf2maf reannotation

  mskcc/vcf2maf#317 · Filter by author sggaffney opened on Jun 2, 2022

• Incorrect Entrez-Hugo Symbol mapping of chr1, 13365776

  mskcc/vcf2maf#227 · Filter by author thomasyu888 opened on Jun 18, 2019
  1

• maf2vcf.pl: multiple FILTER tags should be semicolon separated

  mskcc/vcf2maf#209 · Filter by author soccin opened on Dec 30, 2018
  2

• New VEP does not handle Delly SV VCFs

  mskcc/vcf2maf#208 · Filter by author ckandoth opened on Dec 26, 2018

• FILTER tags of same variant from different samples are being merged

  bug
  mskcc/vcf2maf#142 · Filter by author ckandoth opened on Sep 28, 2017