Issues

• using pipeline-structural-variation for non-human data

  nanoporetech/pipeline-structural-variation#25 · Filter by author splaisan opened on Jul 13, 2021

• Solving environment fails

  nanoporetech/pipeline-structural-variation#24 · Filter by author prakashraaz opened on Jul 7, 2021

• Issue with eval target

  nanoporetech/pipeline-structural-variation#23 · Filter by author ArjenB85 opened on May 17, 2021
  1

• Is cuteSV able to read .csi index file?

  nanoporetech/pipeline-structural-variation#22 · Filter by author giuliafrascarelli opened on Apr 14, 2021

• cuteSV nanopore parameters.

  nanoporetech/pipeline-structural-variation#21 · Filter by author humbleflowers opened on Mar 30, 2021
  1

• Module dependency error

  nanoporetech/pipeline-structural-variation#20 · Filter by author jimmy200340 opened on Mar 26, 2021

• MissingRuleException error

  nanoporetech/pipeline-structural-variation#19 · Filter by author hannahgoldswain opened on Mar 24, 2021
  5

• No module named 'boto3'

  nanoporetech/pipeline-structural-variation#17 · Filter by author Payam-Ebadi opened on Mar 20, 2021
  1

• VCF output not reporting translocations/inversions/duplications

  nanoporetech/pipeline-structural-variation#16 · Filter by author damioresegun opened on Jan 25, 2021
  2

• Start pipeline from VCF file

  nanoporetech/pipeline-structural-variation#15 · Filter by author ndierckx opened on Nov 1, 2020

• Deprecated option in Snakefile call_sniffles

  nanoporetech/pipeline-structural-variation#14 · Filter by author sotakan opened on Aug 16, 2020

• _sniffles_filtered.vcf.gz no vcf headers

  nanoporetech/pipeline-structural-variation#13 · Filter by author ggrimes opened on Jun 19, 2020

• trouble installing pipeline

  nanoporetech/pipeline-structural-variation#10 · Filter by author l-yampolsky opened on Apr 27, 2020
  7

• mosdepth not found due to dependency issue

  nanoporetech/pipeline-structural-variation#7 · Filter by author ashrosewood opened on Jan 23, 2020
  1

• snakemake install failure

  nanoporetech/pipeline-structural-variation#6 · Filter by author chansnotes opened on Nov 19, 2019
  2

• pipeline cannot access .py scripts at /home/user/pipeline-structural-variation-1.2.0/lib/pipeline_structural_variation

  nanoporetech/pipeline-structural-variation#5 · Filter by author BCArg opened on Oct 16, 2019
  3

• Question about the SV pipeline

  nanoporetech/pipeline-structural-variation#4 · Filter by author mldmort opened on Sep 25, 2019
  1

• Check config values on invocation

  enhancement
  nanoporetech/pipeline-structural-variation#3 · Filter by author philres opened on Sep 10, 2019
  

• pipeline installation fails

  nanoporetech/pipeline-structural-variation#1 · Filter by author kamalfartiyal84 opened on Aug 27, 2019
  7