Issues

• Housekeeping: line endings, and two examples that invite wrong inferences

  contenthousekeeping
  naturalis/DABDGE#25 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• The repository fails its own FAIR audit on licensing

  contenthousekeeping
  naturalis/DABDGE#24 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09
  1

• Confirm who provides the teaching environment

  coordinationenvironment
  naturalis/DABDGE#23 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• Add a glossary

  beginnerscontent
  naturalis/DABDGE#21 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• Lectures have no timing marks, no marked break and no statement about slides

  content
  naturalis/DABDGE#20 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• No expected output and no signposting of intentional errors

  beginnerscontent
  naturalis/DABDGE#19 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09
  1

• Nobody is told to clone the repository, and data/ means two different directories

  beginnersblocker
  naturalis/DABDGE#17 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09
  1

• make_figures.py writes to a hard-coded absolute path

  codehousekeeping
  naturalis/DABDGE#14 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• NCBI throttling, and no fallback when a service is slow

  codeenvironment
  naturalis/DABDGE#12 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• Broken and fragile R snippets in TP2.2, TP2.3 and TP2.4

  blockercode
  naturalis/DABDGE#11 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09
  1

• Practicals assume a POSIX shell but the README says any operating system is fine

  beginnersenvironment
  naturalis/DABDGE#10 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• BLAST has no Apple Silicon build in bioconda

  blockerenvironment
  naturalis/DABDGE#9 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• Two R installations: conda R versus the RStudio from week 1

  beginnersblockerenvironment
  naturalis/DABDGE#8 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• environment.yml needs pinning, a channel fix and a decision about R

  blockerenvironment
  naturalis/DABDGE#7 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• Broken link to make_figures.py

  housekeeping
  naturalis/DABDGE#6 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09

• Add the missing data/ directory

  blockercontent
  naturalis/DABDGE#2 · Filter by author rvosa opened on Sep 19, 2026 · edition-2026-09