Commits

Commits on Jan 31, 2026

Install blast for tests to get faster version
evolarjun
committed

Commits on Jan 26, 2026

Version 4.2.7, fixes issue #180 PD-5549

authored

Commits on Dec 9, 2025

Fixes for tests and github actions
evolarjun
authored

Commits on Dec 6, 2025

Fixes for tests necessitated by new test files (#176)
evolarjun
authored

Commits on Dec 5, 2025

Bug fix release 4.2.5
evolarjun
committed
Add in file missing from test
evolarjun
committed
Added tests for POINT_DISRUPT
evolarjun
committed
PD-5507 Add AMRProt-susceptible.fa to amrfinder_update.cpp
Vyacheslav Brover
committed

Commits on Dec 4, 2025

Commits on Dec 2, 2025

Commits on Nov 13, 2025

PD-5469 Make error messages of amrfinder_update human readable
Vyacheslav Brover
committed

Commits on Sep 26, 2025

Update tests for latest version
evolarjun
committed

Commits on Sep 25, 2025

PD-5395 cirA_A169AERSPHNFPKATer becomes cirA_A169insTer10, ompK35_N...Y82del becomes ompK35_N82_Y310del
Vyacheslav Brover
committed

Commits on Sep 24, 2025

PD-5445 Element symbols and element names are checked not to be "NA" in the report file
Vyacheslav Brover
committed

Commits on Sep 22, 2025

PD-5423 stop codon amino acid is changed: STOP -> Ter
Vyacheslav Brover
committed

Commits on Sep 12, 2025

PD-5427 [partial] fusion protein BLAST hit should be extended by >= 20 aa over a non-fusion protein hit to override it
Vyacheslav Brover
committed

Commits on Aug 19, 2025

PD-5427 bug: partial bifunctional hits were reported by 2 hits
Vyacheslav Brover
committed
JIRA PD-5426 bug in reporting strand by dna_mutation.cpp
Vyacheslav Brover
committed

Commits on Aug 11, 2025

StxTyper to remove stop codon from % id PD-5306
evolarjun
committed

Commits on Jul 22, 2025

PD-5394 only first gene disruption mutation is reported
Vyacheslav Brover
committed

Commits on Jul 16, 2025

PD-5393 subtype POINT should be preferred over POINT_DISRUPT; StxTyper ver. 1.0.45 of branch 'dev'
Vyacheslav Brover
committed

Commits on Jun 21, 2025

PD-5379 set subtype to POINT_DISRUPT for broken genes
Vyacheslav Brover
committed

Commits on Jun 11, 2025

PD-5370 bug in reporting broken genes without stop codons in negative strand
Vyacheslav Brover
committed

Commits on Jun 9, 2025

PD-5363 bug in long insertions in broken genes: undetected stop codon; PD-5364 remove parallism in blastn due to SB-4472
Vyacheslav Brover
committed

Commits on Jun 4, 2025

PD-5358 amrfinder_index allows empty gpipe_taxgroup in taxgroup.tsv
Vyacheslav Brover
committed

Commits on May 20, 2025

PD-5322 fixing stx commit
Vyacheslav Brover
committed

Commits on May 19, 2025

PD-5322 Taxgroup can have no GPipe organism
Vyacheslav Brover
committed
PD-5329 Broken genes
Vyacheslav Brover
committed

Commits on May 12, 2025

Merge pull request #165 from ncbi/dev handle new PGAP output format
evolarjun
authored
PD-5318 --pgap can have a standard GFF format
Vyacheslav Brover
committed

Commits on Apr 21, 2025

Modification of Makefile because of build issues
evolarjun
committed

Commits on Apr 17, 2025

Merge branch dev for version 4.0.22
evolarjun
committed