Issues

• [BUG]: <FCS cannot detect mitochondrion-derived sequences>

  ncbi/fcs#126 · Filter by author jsg8145 opened on Aug 5, 2026
  1

• Is there a size limit for the input file?

  ncbi/fcs#125 · Filter by author zhaoxuetong opened on May 14, 2026
  1

• The sequence was not sent to contam.fasta

  ncbi/fcs#123 · Filter by author maruiqi0710 opened on Jan 18, 2026
  1

• How to treat same-kingdom chimeric sequences, transposons, repeats, low-coverage sequences, and inconclusive results as contaminants

  ncbi/fcs#122 · Filter by author maruiqi0710 opened on Jan 14, 2026
  7

• IO load?

  ncbi/fcs#121 · Filter by author DLBPointon opened on Dec 1, 2025
  3

• "clean" function unmasks the genome?

  ncbi/fcs#118 · Filter by author wackerk opened on Sep 25, 2025
  1

• [FEATURE REQUEST]: FCS-GX: need for iteration not emphasized enough in WIKI - automatic iteration needed?

  ncbi/fcs#113 · Filter by author ckeeling opened on Jul 14, 2025
  1

• [BUG]: FCS adaptor container no longer contains bash,

  ncbi/fcs#111 · Filter by author oneillkza opened on May 5, 2025
  1

• [BUG]: Differences between FCS-adapter contaminant descriptions and UniVec?

  ncbi/fcs#102 · Filter by author cjfields opened on Nov 20, 2024
  2

• [FEATURE REQUEST]: disable generation of cleaned sequences

  ncbi/fcs#95 · Filter by author fgvieira opened on Aug 23, 2024
  4

• [FEATURE REQUEST]: clean up temp when finishes

  ncbi/fcs#91 · Filter by author fgvieira opened on Jul 4, 2024
  1

• [BUG]: /bin/sh does not exist in container

  ncbi/fcs#90 · Filter by author fgvieira opened on Jul 3, 2024
  5

• Screening for mitochondrion

  enhancement
  ncbi/fcs#65 · Filter by author wharvey31 opened on Jan 19, 2024
  5

• [FEATURE REQUEST]: skip over/ignore short sequences

  enhancement
  ncbi/fcs#62 · Filter by author ptrebert opened on Jan 11, 2024
  3

• [BUG]: permanentFail during job blast

  ncbi/fcs#44 · Filter by author egonozer opened on Jun 23, 2023
  7