Issues

• Add a minimal module

  obophenotype/ncbitaxon#144 · Filter by author cmungall opened on Jun 19, 2026

• Possibility of adding DIV, hasSTY, TUI and CUI properties in the release file (ncbitaxon.owl)

  obophenotype/ncbitaxon#132 · Filter by author hrshdhgd opened on Jul 21, 2025

• Request for 'termReplacedBy' annotation for deprecated terms in NCBITaxon

  obophenotype/ncbitaxon#122 · Filter by author Anoosha-Sehar opened on Feb 13, 2025
  6

  

• Document pattern for materializing most specific taxon constraints for a class

  obophenotype/ncbitaxon#116 · Filter by author cmungall opened on Aug 14, 2024

• Add definition for "strain"

  obophenotype/ncbitaxon#107 · Filter by author DanBerrios opened on May 3, 2024
  6

• Prefix

  obophenotype/ncbitaxon#102 · Filter by author chrishmorris opened on Mar 7, 2024
  2

• improve disjoints file

  obophenotype/ncbitaxon#72 · Filter by author balhoff opened on Jan 11, 2023
  6

  

• Create subsets for domains (bacteria, archaea, eukaryotes) and a subset for all viruses

  obophenotype/ncbitaxon#61 · Filter by author cmungall opened on Jan 12, 2022
  

• Consider a non-isomorphic mappings to NCBI Taxon database

  obophenotype/ncbitaxon#55 · Filter by author cmungall opened on May 11, 2021
  1

• for discussion: create nodes for ancestral species

  obophenotype/ncbitaxon#53 · Filter by author cmungall opened on Apr 1, 2021
  3

• Docs: Inject web page link into header & Document differences to UMLS/BioPortal rendering

  obophenotype/ncbitaxon#50 · Filter by author cmungall opened on Dec 16, 2020
  1

• What are GC_IDs?

  obophenotype/ncbitaxon#47 · Filter by author cthoyt opened on Dec 8, 2020
  5

• Provide standard place for union taxa

  obophenotype/ncbitaxon#45 · Filter by author cmungall opened on Nov 23, 2020
  7

• Partially obsoleted term NCBITaxon_1170837 clinocardium californiense

  obophenotype/ncbitaxon#44 · Filter by author ddooley opened on Sep 4, 2020
  2

• Add xrefs and subsets of uniprot reference proteomes to ncbitaxon build

  obophenotype/ncbitaxon#43 · Filter by author cmungall opened on Aug 28, 2020
  

• Make NCBI:txid identifiers secondary ids in the ontology?

  obophenotype/ncbitaxon#40 · Filter by author sierra-moxon opened on Jun 1, 2020
  6

• Travis Job - should it run or not?

  obophenotype/ncbitaxon#37 · Filter by author matentzn opened on Apr 20, 2020
  2

  

• Changing purls to GitHub and Release plan

  obophenotype/ncbitaxon#36 · Filter by author matentzn opened on Apr 19, 2020
  9

  

• Enhance Python code for subset extraction

  enhancement
  obophenotype/ncbitaxon#34 · Filter by author jamesaoverton opened on Apr 9, 2020

• Include obsolete taxa

  enhancement
  obophenotype/ncbitaxon#33 · Filter by author jamesaoverton opened on Apr 9, 2020
  

• Plan on regular (scripted?) releases?

  obophenotype/ncbitaxon#13 · Filter by author bjonnh opened on Jul 27, 2018
  18

• Propose changing the label on the NCBI top level term to 'NCBI root'

  obophenotype/ncbitaxon#10 · Filter by author cooperl09 opened on Feb 17, 2017
  7

• add namespace

  obophenotype/ncbitaxon#8 · Filter by author ybradford opened on Sep 19, 2016
  1

• authority missing from taxa

  obophenotype/ncbitaxon#6 · Filter by author cmungall opened on Aug 26, 2016
  2

• Use both SCHPO (deprecated) and SCHPM (preferred) in the taxon checker

  obophenotype/ncbitaxon#4 · Filter by author selewis opened on Oct 25, 2015
  3