Commits

Commits on Sep 9, 2026

Remove dead HistAI datahub entry and the duplicate STHD line

p-gueguen
and
claude
committed
ec5a375
Merge pull request #20 from p-gueguen/add-2026-tools-and-link-fixes
p-gueguen
authored
56ce4ea
Add 57 entries (2026 methods, preprints, missing baselines) and fix 4 dead links

p-gueguen
and
claude
committed
0814c0f

Commits on Aug 17, 2026

Add TERRA (Foundation Models) and DISSECT (Cell Segmentation)

p-gueguen
and
claude
committed
32f7cab

Commits on Jul 16, 2026

Merge pull request #19 from KalinNonchev/add-virtual-st-datasets
p-gueguen
authored
271e597

Commits on Jul 15, 2026

Call HEST Xenium profiles cells, not spots.

KalinNonchev
and
cursoragent
committed
f6e1c0a
Add TCGA and HEST Xenium virtual spatial transcriptomics datasets.

KalinNonchev
and
cursoragent
committed
4c3dd23

Commits on Jul 14, 2026

Merge pull request #16 from KalinNonchev/fix-deepspot-link-and-paper
p-gueguen
authored
8ee0e50
Merge pull request #17 from KalinNonchev/add-deepspot2cell-entry
p-gueguen
authored
971de3a
Merge pull request #18 from KalinNonchev/add-aestetik-paper
p-gueguen
authored
fc0a50c
Update AESTETIK paper link to Bioinformatics

KalinNonchev
and
cursoragent
committed
0110df6
Point DeepSpot2Cell paper to NeurIPS OpenReview

KalinNonchev
and
cursoragent
committed
e2d8fa8
Use medRxiv 2024 paper title/link for AESTETIK

KalinNonchev
and
cursoragent
committed
b4b3b24
Note NeurIPS 2025 Imageomics venue for DeepSpot2Cell

KalinNonchev
and
cursoragent
committed
2e6b11b
Add Bioinformatics paper link for AESTETIK

KalinNonchev
and
cursoragent
committed
9cd2ebe
Add DeepSpot2Cell under Transcripts + Histology

KalinNonchev
and
cursoragent
committed
2ea9975
Fix DeepSpot code link and add paper

KalinNonchev
and
cursoragent
committed
d044fae

Commits on Jul 13, 2026

Add LYNX (Integration) - multimodal spatial gradient inference via deep generative model

p-gueguen
and
claude
committed
752b150

Commits on Jul 7, 2026

Commits on Jul 6, 2026

Add SpatialWhisperer (Transcripts + Histology) - trimodal H&E+ST+text foundation model (ICML 2026)

p-gueguen
and
claude
committed
64a6af5

Commits on Jul 3, 2026

Add DeepSpotM (Transcripts + Histology) - multimodal foundation model for virtual ST from H&E

p-gueguen
and
claude
committed
711e59d

Commits on Jun 25, 2026

Add XeniumClean (Bias Correction) - neighbour-aware transcript cleanup for imaging ST

p-gueguen
and
claude
committed
ca58c0a

Commits on Jun 22, 2026

Add SpatialArtifacts (QC) and UCASpatial (Cell Deconvolution)

p-gueguen
and
claude
committed
e459c5d
Add Cellpin to Gene Imputation & Denoising

p-gueguen
and
claude
committed
bd371e7

Commits on Jun 15, 2026

Add CytoSignal to Cell-Cell Communication

p-gueguen
and
claude
committed
97438b5

Commits on Jun 2, 2026

Add 10 recent spatial transcriptomics tools (last-6-months active)

p-gueguen
and
claude
committed
f6fe1cf

Commits on May 13, 2026

Probe Design: prune to capture-array tools + add OPT off-target auditor

p-gueguen
and
claude
committed
ab271aa
Add Probe & Panel Design section

p-gueguen
and
claude
committed
ed1aabb

Commits on May 12, 2026

Add Phoenix (peng-lab) to Visual-Omics & Multimodal foundation models

p-gueguen
and
claude
committed
70e1f47

Commits on May 6, 2026

Add Histoboard to pathology benchmarks list
p-gueguen
authored
67d07e8

Commits on Apr 9, 2026

Remove DACN

p-gueguen
and
claude
committed
e433849
Add 7 new Q1 2026 spatial transcriptomics tools

p-gueguen
and
claude
committed
f6c2452

Commits on Mar 23, 2026

Merge pull request #15 from p-gueguen/copilot/add-tutorial-proposed-pipeline
p-gueguen
authored
dd42f12
docs: add VisiumHD Proseg/Novae tutorial link

Copilot
and
p-gueguen
committed
50fa3b4