Issues

• different number of calls when running the same sample twice

  parklab/xTea#158 · Filter by author annsophiegironne opened on Sep 17, 2026

• TE Insertion Merging and SVLEN

  parklab/xTea#157 · Filter by author grennfp opened on Jun 8, 2026

• Error when calling pseudogenes from long reads data

  parklab/xTea#155 · Filter by author MartinaCasc opened on Apr 15, 2026
  4

• xTea gets randomly stuck but doesn't crash

  bugenhancement
  parklab/xTea#150 · Filter by author hcastel opened on Feb 18, 2026
  8

• Question about --postF --postFmosaic failure after --sibling (TypeError: write() argument must be str, not int)

  parklab/xTea#148 · Filter by author UnlimitedW opened on Jan 31, 2026
  3

• all vcf records annotated as INS:ME:SVAwhen using a custom library

  bug
  parklab/xTea#141 · Filter by author jazberna1 opened on Jul 9, 2025
  1

• ghost_reads.fa.separate_flanking.fa': No such file or directory

  parklab/xTea#127 · Filter by author ucsfpan opened on Sep 10, 2024
  2

• xTea_long getting stuck, no errors, during wtpoa-cns, running HG38

  parklab/xTea#106 · Filter by author vaksmaz opened on Apr 22, 2024
  2

• Sporadic inconsistent errors with xtea_long

  parklab/xTea#93 · Filter by author yuliamostovoy opened on Oct 31, 2023
  9

• pseudogenes insertion from pacbio bam

  parklab/xTea#44 · Filter by author AhmedArslan opened on Mar 28, 2022

• VCF output for xtea_long?

  enhancementlong reads
  parklab/xTea#29 · Filter by author eyalmpeer opened on Dec 15, 2021
  6

• For SLURM your default email address should change

  enhancement
  parklab/xTea#21 · Filter by author Phillip-a-richmond opened on Oct 4, 2021
  1

• xTea on plant species

  enhancement
  parklab/xTea#20 · Filter by author agolicz opened on Sep 24, 2021
  29

• FileNotFoundError: [Errno 2] No such file or directory and x_TEA_main.py: error: no such option: --bamsnap

  bug
  parklab/xTea#19 · Filter by author tkrwy opened on Sep 24, 2021
  14