Issues

Move over to new way of organizing files as per snakemake recommended structure
pd321/chipseq#25 · opened on Mar 19, 2023
Migrate to github actions
pd321/chipseq#21 · opened on Jun 30, 2021
Let bw files be created by a seperate tool independet of MACS2
pd321/chipseq#20 · opened on Jun 30, 2021
1
Macs2: Run differently for PE and SE datasets
pd321/chipseq#19 · opened on Jun 30, 2021
Add support for post trimming fastqc
pd321/chipseq#17 · opened on May 2, 2021
When run as default with SE files the following error is observed
pd321/chipseq#16 · opened on May 2, 2021
Change picard syntax as per new style of giving arguments
pd321/chipseq#14 · opened on Jul 24, 2020
Add bwtools and r based PCA
pd321/chipseq#12 · opened on Jul 20, 2020
Add checklists for pre and post launch
pd321/chipseq#11 · opened on May 30, 2020
Macs2: Add support for broad peak calling
pd321/chipseq#10 · opened on May 30, 2020
Multiqc: Runs out of order with only SE or PE dataset
pd321/chipseq#9 · opened on May 30, 2020
Get pe/se status directly when creating metadata.tsv
pd321/chipseq#1 · opened on Apr 19, 2020