Commits

Commits on Aug 30, 2026

New option `-F, --format` to extend the consequence annotation.
pd3
committed
905ea78

Commits on Aug 28, 2026

To comply with the VCF specification, the INFO/MQ output tag is now declared as Type=Float rather than Type=Integer
pd3
committed
9fb92d7

Commits on Aug 21, 2026

Make `--nrecords` with non-standard file extensions. Resolves #2588
pd3
committed
294c92d
Fix man page typo, correct is --trim-unseen-allele, not --trim-unseen-alleles (resolves #2586)
pd3
committed
608fc0c
New option `--allow` to selectively relax validation checks
pd3
committed
6eaa935

Commits on Jul 30, 2026

Better error reporting on invalid --samples file, don't segfault
pd3
committed
f098ab5

Commits on Jul 23, 2026

Ignore git safe.directory warnings in VERSION query

jkbonfield
authored and
pd3
committed
daafac9
Fix version.sh to work on a git clone without git executable.

jkbonfield
authored and
pd3
committed
475055d
Fix plot-vcfstats to work on uncompressed data.

jkbonfield
authored and
pd3
committed
4ee48aa
Add more CI tests for linux containers and BSD/Solaris VMs

jkbonfield
authored and
pd3
committed
61ba4d0
Add concurrency checks to the older linux/mac/windows CI tests

jkbonfield
authored and
pd3
committed
5a57714

Commits on Jul 13, 2026

Read compressed vchk files
pd3
committed
270751f

Commits on Jul 9, 2026

Merge version number bump and NEWS file from master
daviesrob
committed
b4f3d4f
Release 1.24
daviesrob
committed
fb9f0f7

Commits on Jul 8, 2026

Make gtcheck use a stable sort for "idbl"

jkbonfield
authored and
pd3
committed
74318ad

Commits on Jul 6, 2026

Make reglist_sort_() stable

daviesrob
authored and
pd3
committed
f440c1c

Commits on Jul 2, 2026

Changed the version copyright date.

whitwham
authored and
pd3
committed
d4254b1

Commits on Jun 23, 2026

Change sort order for trio-dnm3 test file

daviesrob
authored and
whitwham
committed
7813ff9

Commits on Jun 18, 2026

Ensure PACKAGE_VERSION is set in the Makefile

daviesrob
authored and
pd3
committed
f3e12f6

Commits on Jun 16, 2026

Portability improvements for vcfstats.c

jmarshall
authored and
pd3
committed
15a4091
Fix trivial typo [minor]

jmarshall
authored and
pd3
committed
573950f
Fix Makefile dependencies [minor]

jmarshall
authored and
pd3
committed
f3f30bf
Allow for clock() returning floating point [minor]

jmarshall
authored and
pd3
committed
e07a89b
Update man page
pd3
committed
c574934
Fix the -v/V, --types/--exclude-types option to work with ref
pd3
committed
8d3f754
Fix a minor memory leak: close severity file when done
pd3
committed
4a59485
Merge branch 'develop' of github.com:samtools/bcftools into develop
pd3
committed
c972fb2
Add support for SnpEff output
pd3
committed
3b0ec92

Commits on Jun 3, 2026

Make the advertised default for `-t, --threshold` match the implementation.
pd3
committed
e250385
Print a warning when `call -m` is used w/o -v
pd3
committed
f5e6080

Commits on Jun 1, 2026

Commits on May 22, 2026

Add a new -G, --greedy option
pd3
committed
90e6025

Commits on May 21, 2026

[Minor] fix typos, add comments
pd3
committed
b308be5

Commits on May 20, 2026

Stage text output through canonical VCF consequences
pd3
committed
e0ec6ab