htslib/test at develop · samtools/htslib

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Name		Name	Last commit message	Last commit date
parent directory ..
annot-tsv		annot-tsv
base_mods		base_mods
bcf-sr		bcf-sr
bgzf_boundaries		bgzf_boundaries
faidx		faidx
fastq		fastq
fuzz		fuzz
longrefs		longrefs
maintainer		maintainer
mpileup		mpileup
ref_cache		ref_cache
sam_filter		sam_filter
tabix		tabix
tlen		tlen
auxf#values.sam		auxf#values.sam
auxf#values_java.cram		auxf#values_java.cram
auxf.fa		auxf.fa
auxf.fa.fai		auxf.fa.fai
bgziptest.txt		bgziptest.txt
bgziptest.txt.gz		bgziptest.txt.gz
bgziptest.txt.gz.gzi		bgziptest.txt.gz.gzi
c1#bounds.sam		c1#bounds.sam
c1#clip.sam		c1#clip.sam
c1#noseq.sam		c1#noseq.sam
c1#pad1.sam		c1#pad1.sam
c1#pad2.sam		c1#pad2.sam
c1#pad3.sam		c1#pad3.sam
c1#unknown.sam		c1#unknown.sam
c1.fa		c1.fa
c1.fa.fai		c1.fa.fai
c2#pad.sam		c2#pad.sam
c2.fa		c2.fa
c2.fa.fai		c2.fa.fai
ce#1.sam		ce#1.sam
ce#1000.sam		ce#1000.sam
ce#2.sam		ce#2.sam
ce#5.sam		ce#5.sam
ce#5b.sam		ce#5b.sam
ce#5b_java.cram		ce#5b_java.cram
ce#large_seq.sam		ce#large_seq.sam
ce#supp.sam		ce#supp.sam
ce#tag_depadded.sam		ce#tag_depadded.sam
ce#tag_padded.sam		ce#tag_padded.sam
ce#unmap.sam		ce#unmap.sam
ce#unmap1.sam		ce#unmap1.sam
ce#unmap2.sam		ce#unmap2.sam
ce.fa		ce.fa
ce.fa.fai		ce.fa.fai
colons.bam		colons.bam
colons.bam.bai		colons.bam.bai
compare_sam.pl		compare_sam.pl
cross_validate.sh		cross_validate.sh
embed_MD.sam		embed_MD.sam
emptyfile		emptyfile
fastqs_README.txt		fastqs_README.txt
fieldarith.c		fieldarith.c
fieldarith.sam		fieldarith.sam
formatcols.vcf		formatcols.vcf
formatmissing-out.vcf		formatmissing-out.vcf
formatmissing.vcf		formatmissing.vcf
header_syms.pl		header_syms.pl
hfile.c		hfile.c
hts_endian.c		hts_endian.c
index.bam.bai		index.bam.bai
index.bam.csi		index.bam.csi
index.bcf.csi		index.bcf.csi
index.cram.crai		index.cram.crai
index.sam		index.sam
index.sam.gz.bai		index.sam.gz.bai
index.sam.gz.csi		index.sam.gz.csi
index.vcf		index.vcf
index.vcf.gz.csi		index.vcf.gz.csi
index.vcf.gz.tbi		index.vcf.gz.tbi
index2.sam		index2.sam
index3.sam		index3.sam
index3_exp.sam		index3_exp.sam
index_dos.sam		index_dos.sam
md#1.sam		md#1.sam
md.fa		md.fa
md.fa.fai		md.fa.fai
mock_http_server.py		mock_http_server.py
modhdr.expected.vcf		modhdr.expected.vcf
modhdr.vcf.gz		modhdr.vcf.gz
modhdr.vcf.gz.csi		modhdr.vcf.gz.csi
no_hdr_sq_1.bam		no_hdr_sq_1.bam
no_hdr_sq_1.bam.csi		no_hdr_sq_1.bam.csi
no_hdr_sq_1.expected.sam		no_hdr_sq_1.expected.sam
noroundtrip-out.vcf		noroundtrip-out.vcf
noroundtrip.vcf		noroundtrip.vcf
pileup.c		pileup.c
pileup_mod.c		pileup_mod.c
plugins-dlhts.c		plugins-dlhts.c
range.bam		range.bam
range.bam.bai		range.bam.bai
range.cram		range.cram
range.cram.crai		range.cram.crai
range.out		range.out
range.out2		range.out2
realn01.fa		realn01.fa
realn01.fa.fai		realn01.fa.fai

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