Issues

• Clarification of hits vs mKmers

  shenwei356/kmcp#55 · Filter by author ktashman opened on Oct 22, 2025
  1

• kmcp profile Error: " matched reads can not belong to the references in the profile" despite successful kmcp search results

  shenwei356/kmcp#54 · Filter by author xujialupaoli opened on Jun 18, 2025
  3

• search of gene cluster against database form metagenomics fastQ files.

  shenwei356/kmcp#53 · Filter by author AhmedElsherbini opened on Feb 25, 2025
  1

• Search optimization

  shenwei356/kmcp#52 · Filter by author kabilov opened on Nov 28, 2024
  2

• What does header of Reference database fasta file has to look like ?

  shenwei356/kmcp#49 · Filter by author arpit20328 opened on Sep 10, 2024
  2

• Two questions related to the Fig1 in the paper

  shenwei356/kmcp#48 · Filter by author caojy-sys opened on Sep 8, 2024
  4

• the link for cowtransfer is no longer valid

  shenwei356/kmcp#47 · Filter by author F4NG666 opened on Sep 4, 2024
  1

• Prebuilt databases is no longer available

  shenwei356/kmcp#46 · Filter by author dnj000701 opened on Aug 19, 2024
  3

• Merge kmcp profilings of multiple samples

  shenwei356/kmcp#45 · Filter by author DrYoungOG opened on Jun 10, 2024
  4

• How to profile results only identify 1 species per reference

  shenwei356/kmcp#44 · Filter by author nvhphuc1206 opened on Mar 21, 2024
  6

• TODO: save the search result into a serializing binary file for fast downstream parsing

  shenwei356/kmcp#40 · Filter by author shenwei356 opened on Sep 4, 2023
  3

• Optimizing KMCP with HumGut

  shenwei356/kmcp#38 · Filter by author ericvdtoorn opened on Aug 29, 2023
  9

• [Suggestion] Use score calibration when identifying proviruses and plasmids

  shenwei356/kmcp#35 · Filter by author apcamargo opened on Jul 20, 2023
  2

• Masking prophages in bacterial genomes before building database as Phanta does

  databasework-in-progress
  shenwei356/kmcp#29 · Filter by author shenwei356 opened on Jun 6, 2023
  2

• suitable for CDS and/or contig taxonomic assignment?

  shenwei356/kmcp#28 · Filter by author AstrobioMike opened on May 22, 2023
  2

• long read metagenomic profiling

  documentation
  shenwei356/kmcp#27 · Filter by author JensUweUlrich opened on Mar 27, 2023
  2

• Automatically disable ambiguous-matches correction for complex communities with thousands of species

  enhancement
  shenwei356/kmcp#13 · Filter by author shenwei356 opened on May 20, 2022