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annotate_protein_domains.cpp
annotate_protein_domains.cpp
 
 
annotate_protein_domains.hpp
annotate_protein_domains.hpp
 
 
annotate_tags.cpp
annotate_tags.cpp
 
 
annotate_tags.hpp
annotate_tags.hpp
 
 
annotation.cpp
annotation.cpp
 
 
annotation.hpp
annotation.hpp
 
 
annotation.t.hpp
annotation.t.hpp
 
 
arriba.cpp
arriba.cpp
 
 
assembly.cpp
assembly.cpp
 
 
assembly.hpp
assembly.hpp
 
 
common.hpp
common.hpp
 
 
filter_blacklisted_ranges.cpp
filter_blacklisted_ranges.cpp
 
 
filter_blacklisted_ranges.hpp
filter_blacklisted_ranges.hpp
 
 
filter_both_intronic.cpp
filter_both_intronic.cpp
 
 
filter_both_intronic.hpp
filter_both_intronic.hpp
 
 
filter_duplicates.cpp
filter_duplicates.cpp
 
 
filter_duplicates.hpp
filter_duplicates.hpp
 
 
filter_end_to_end.cpp
filter_end_to_end.cpp
 
 
filter_end_to_end.hpp
filter_end_to_end.hpp
 
 
filter_genomic_support.cpp
filter_genomic_support.cpp
 
 
filter_genomic_support.hpp
filter_genomic_support.hpp
 
 
filter_hairpin.cpp
filter_hairpin.cpp
 
 
filter_hairpin.hpp
filter_hairpin.hpp
 
 
filter_homologs.cpp
filter_homologs.cpp
 
 
filter_homologs.hpp
filter_homologs.hpp
 
 
filter_homopolymer.cpp
filter_homopolymer.cpp
 
 
filter_homopolymer.hpp
filter_homopolymer.hpp
 
 
filter_in_vitro.cpp
filter_in_vitro.cpp
 
 
filter_in_vitro.hpp
filter_in_vitro.hpp
 
 
filter_inconsistently_clipped.cpp
filter_inconsistently_clipped.cpp
 
 
filter_inconsistently_clipped.hpp
filter_inconsistently_clipped.hpp
 
 
filter_intragenic_both_exonic.cpp
filter_intragenic_both_exonic.cpp
 
 
filter_intragenic_both_exonic.hpp
filter_intragenic_both_exonic.hpp
 
 
filter_long_gap.cpp
filter_long_gap.cpp
 
 
filter_long_gap.hpp
filter_long_gap.hpp
 
 
filter_low_coverage_viral_contigs.cpp
filter_low_coverage_viral_contigs.cpp
 
 
filter_low_coverage_viral_contigs.hpp
filter_low_coverage_viral_contigs.hpp
 
 
filter_low_entropy.cpp
filter_low_entropy.cpp
 
 
filter_low_entropy.hpp
filter_low_entropy.hpp
 
 
filter_marginal_read_through.cpp
filter_marginal_read_through.cpp
 
 
filter_marginal_read_through.hpp
filter_marginal_read_through.hpp
 
 
filter_min_support.cpp
filter_min_support.cpp
 
 
filter_min_support.hpp
filter_min_support.hpp
 
 
filter_mismappers.cpp
filter_mismappers.cpp
 
 
filter_mismappers.hpp
filter_mismappers.hpp
 
 
filter_mismatches.cpp
filter_mismatches.cpp
 
 
filter_mismatches.hpp
filter_mismatches.hpp
 
 
filter_multimappers.cpp
filter_multimappers.cpp
 
 
filter_multimappers.hpp
filter_multimappers.hpp
 
 
filter_no_coverage.cpp
filter_no_coverage.cpp
 
 
filter_no_coverage.hpp
filter_no_coverage.hpp
 
 
filter_non_coding_neighbors.cpp
filter_non_coding_neighbors.cpp
 
 
filter_non_coding_neighbors.hpp
filter_non_coding_neighbors.hpp
 
 
filter_proximal_read_through.cpp
filter_proximal_read_through.cpp
 
 
filter_proximal_read_through.hpp
filter_proximal_read_through.hpp
 
 
filter_relative_support.cpp
filter_relative_support.cpp
 
 
filter_relative_support.hpp
filter_relative_support.hpp
 
 
filter_same_gene.cpp
filter_same_gene.cpp
 
 
filter_same_gene.hpp
filter_same_gene.hpp
 
 
filter_short_anchor.cpp
filter_short_anchor.cpp
 
 
filter_short_anchor.hpp
filter_short_anchor.hpp
 
 
filter_small_insert_size.cpp
filter_small_insert_size.cpp
 
 
filter_small_insert_size.hpp
filter_small_insert_size.hpp
 
 
filter_top_expressed_viral_contigs.cpp
filter_top_expressed_viral_contigs.cpp
 
 
filter_top_expressed_viral_contigs.hpp
filter_top_expressed_viral_contigs.hpp
 
 
filter_uninteresting_contigs.cpp
filter_uninteresting_contigs.cpp
 
 
filter_uninteresting_contigs.hpp
filter_uninteresting_contigs.hpp
 
 
filter_viral_contigs.cpp
filter_viral_contigs.cpp
 
 
filter_viral_contigs.hpp
filter_viral_contigs.hpp
 
 
fusions.cpp
fusions.cpp
 
 
fusions.hpp
fusions.hpp
 
 
merge_adjacent_fusions.cpp
merge_adjacent_fusions.cpp
 
 
merge_adjacent_fusions.hpp
merge_adjacent_fusions.hpp
 
 
options.cpp
options.cpp
 
 
options.hpp
options.hpp
 
 
output_fusions.cpp
output_fusions.cpp
 
 
output_fusions.hpp
output_fusions.hpp
 
 
read_chimeric_alignments.cpp
read_chimeric_alignments.cpp
 
 
read_chimeric_alignments.hpp
read_chimeric_alignments.hpp
 
 
read_compressed_file.cpp
read_compressed_file.cpp
 
 
read_compressed_file.hpp
read_compressed_file.hpp
 
 
read_stats.cpp
read_stats.cpp
 
 
read_stats.hpp
read_stats.hpp
 
 
recover_both_spliced.cpp
recover_both_spliced.cpp
 
 
recover_both_spliced.hpp
recover_both_spliced.hpp
 
 
recover_internal_tandem_duplication.cpp
recover_internal_tandem_duplication.cpp
 
 
recover_internal_tandem_duplication.hpp
recover_internal_tandem_duplication.hpp
 
 
recover_isoforms.cpp
recover_isoforms.cpp
 
 
recover_isoforms.hpp
recover_isoforms.hpp
 
 
recover_known_fusions.cpp
recover_known_fusions.cpp
 
 
recover_known_fusions.hpp
recover_known_fusions.hpp
 
 
recover_many_spliced.cpp
recover_many_spliced.cpp
 
 
recover_many_spliced.hpp
recover_many_spliced.hpp
 
 
select_best.cpp
select_best.cpp
 
 
select_best.hpp
select_best.hpp