Issues

• RELAX: a seeded run reproduces only with CPU=1 in 2.5.101; the command-line seed had no effect through 2.5.100

  coreenhancement
  veg/hyphy#2024 · Filter by author sunsungkim04-sys opened on Sep 23, 2026
  7

• BUSTED-PH v2.0: comparative test is label-order dependent

  bughblmethodology/applications
  veg/hyphy#2020 · Filter by author tsackton opened on Sep 22, 2026
  3

• GARD (MPI) hangs at exit when site-to-site rate variation (GDD) is enabled — analysis completes, process never terminates (2.5.98)

  veg/hyphy#2016 · Filter by author stevenweaver opened on Sep 17, 2026
  1

• GARD _LikelihoodFunction::GradientLocateTheBump error

  veg/hyphy#2014 · Filter by author shjenkins94 opened on Sep 3, 2026
  1

• How do all of the recent BUSTED methods: E, +S+MH, and PH interact with each other

  veg/hyphy#2011 · Filter by author shjenkins94 opened on Aug 5, 2026
  5