QuickBLAST/DESCRIPTION at main · vizkidd/QuickBLAST · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
Package: QuickBLAST
Type: Package
Title: High-Performance Sequence Alignment using BLAST and Apache Arrow
Version: 1.99.9
Date: 2026-07-22
Authors@R: person(given = "Vishvesh Karthik",
                    family = "",
                    role = c("aut", "cre", "cph"),
                    email = "vishveshkarthik@gmail.com",
                    comment=c(ORCID="0009-0008-0725-4253"))
Maintainer: Vishvesh Karthik <vishveshkarthik@gmail.com>
Description: A BLAST Wrapper to call BLAST directly from R (interoperable and without Sys.call()) coupled with Apache Arrow's columnar format with parquet, IPC and csv file support.
License: GPL (>= 2)
Depends:
  R (>= 4.4.0)
Imports:
  Rcpp (>= 1.0.10),
  RcppProgress (>= 0.4.2),
  dplyr (>= 1.1.4),
  tidyr (>= 1.3.1),
  tzdb (>= 0.5.0),
  iterators (>= 1.0.14),
  arrow (>= 21.0.0.1),
  tools (>= 4.3.1),
  compiler (>= 4.5.2),
  parallel (>= 4.4.1),
  fs (>= 1.6.6),
  RcppThread (>= 2.3.0),
  future (>= 1.69.0),
  future.apply (>= 1.20.2),
  future.callr (>= 0.10.2),
  xfun (>= 0.56),
  BH (>= 1.90.0),
  magrittr (>= 2.0.5)
LinkingTo:
    Rcpp,
    RcppProgress,
    RcppThread,
    BH
biocViews: Software, Alignment, SequenceMatching, Sequencing, DataImport
Encoding: UTF-8
StagedInstall: no
UseLTO: yes
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Language: en-US
Suggests:
    curl (>= 7.0.0),
    formatR (>= 1.14),
    knitr,
    rmarkdown,
    remotes
VignetteBuilder: knitr
Collate:
    'QuickBLAST-package.R'
    'RcppExports.R'
    'QuickBLAST.R'
SystemRequirements: cmake (>= 3.25), sqlite3 (deb: libsqlite3-dev, rpm: sqlite-devel), eigen (deb: libeigen3-dev, rpm: eigen3-devel), boost (deb: libboost-dev, rpm: boost-devel), fontconfig, libcurl, harfbuzz, fribidi, freetype2, libpng, libtiff, libjpeg, libuv (brew: libuv, deb: libuv1-dev, rpm: libuv-devel), nghttp2 (brew: nghttp2, deb: libnghttp2-dev, rpm: libnghttp2-devel), libunwind-dev (deb), libcurl4-openssl-dev (deb), pkg-config
URL: https://github.com/vizkidd/QuickBLAST
BugReports: https://github.com/vizkidd/QuickBLAST/issues