Codex Surface Atlas
Discover cell-surface targets, screen molecules, and generate protein binders in Codex.
Explore example campaign開 →
Jacob
Vogan
生命の特異点 ／ Singularitas biologica
Building AI tools for life science research, including agentic systems for bioinformatics, structural biology, biomanufacturing, and automated labs. AI progress will ideally speed up the pace of research so people can live healthier, longer lives.
Shared repos include harnesses for long-running multi-agent work, molecular biology suite tools for researchers, and general-purpose AI agent skills.
J.V. · 2026●
Projects作品 · SELECTED REPOS
第壱話
BioTools生命
Bioinformatics, structural biology, lab tooling
BioTools · 生命
BioTools · 生命
BioTools · 生命 BioTools · 生命
BioTools · 生命
BioTools · 生命
Motif
A molecular biology workbench for Claude Science. View maps and alignments, make entries and notes, and more — all without leaving Claude Science.
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Claude Binder Lane
Design protein binders in Claude Science with the workflow from Anthropic's protein design study. Name a target and a budget, approve the plan, and get ranked candidates and predicted structures.
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Codex Binder Lane
Design protein binders in Codex: pick target sites, tools, license, and budget, then get sequences and predicted structures.
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Proteus
Structural biology superpowers for AI coding agents: PyMOL, ChimeraX, AlphaFold DB, RCSB PDB, UniProt, and Rosetta workflows.
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BioVoice
Talk to your protein structures. Voice control for PyMOL, ChimeraX, AlphaFold, and Rosetta on the OpenAI Realtime API.
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第弐話
BioSymphony交響曲
Agentic harnesses for biology · long-horizon orchestration
BioSymphony · 交響曲
BioSymphony · 交響曲
BioSymphony · 交響曲
BioSymphony · 交響曲
BioSymphony · 交響曲
BioSymphony · 交響曲
Structure Factory
AI-agent toolkit for structural biology: design binders, map structures, screen candidates, rank results, and prepare cloud-scale runs.
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Small Molecules
Small-molecule design workflows: choose tools, plan synthesis, dock ligands, and check ADMET.
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GeneCluster
Genome-mining workflows for natural products: search public genomes and transcriptomes, compare candidate clusters, and plan follow-up work.
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BioProspector
Biosynthetic route exploration for target molecules: find enzyme and gene candidates and turn pathway ideas into follow-up searches and experiments.
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CryoCore
Cryo-EM workflows for maps, models, figures, state comparison, and local or cloud compute preparation.
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Ferm DoE
Fermentation and biomanufacturing experiment planning: choose design families, check scale context, and prepare run packets.
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第参話
Orchestration指揮
Agent orchestration · Symphony · Linear · cloud compute
Orchestration · 指揮
Orchestration · 指揮
Orchestration · 指揮
Orchestration · 指揮
Orchestration · 指揮
Orchestration · 指揮
A Fable of Codexes
Claude Code skill for orchestrating Codex and Claude worker fleets with campaign state, worktrees, review gates, and resumable plans.
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Ox Driver
Let your main coding agent assign work to independent agent harnesses like Pi, OpenCode, OMP, and more.
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NeoCloud Bridge
Run agent workflows on cloud compute with preflight checks, cost caps, artifact receipts, and cleanup.
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Telegram Codex Bridge
Local-first bridge: OpenAI Codex Desktop ↔ Telegram bot. Text, files, voice notes, and optional realtime calls.
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Symphony Claude Lane
Portable skill for adding a Claude Code lane to OpenAI Symphony + Linear workflows.
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Symphony Linear Starter
Self-improving starter skill / operator toolkit for Codex or Claude Code as orchestrator over Symphony workers + Linear.
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第四話
Agent Skills & Local AI道具
Agent skills, local speech, dev infra
Agent Skills & Local AI · 道具
Agent Skills & Local AI · 道具
Agent Skills & Local AI · 道具
Agent Skills & Local AI · 道具
Valar
Local speech stack for Apple Silicon: TTS, ASR, forced alignment, voices, daemon, and MCP bridge.
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Daneel
Skill that scaffolds a multi-model chatbot for Telegram or Discord. Claude, GPT, Gemini, and OpenAI-compatible backends. Only approved users can reach it, with prompt injection blocked by default.
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yt-agent
AI Agent Tool for terminal-first YouTube search, download, catalog, and clip tooling on yt-dlp.
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WhisperHUD
System-wide voice-to-text for macOS. Hold a hotkey, speak, text appears at your cursor. OpenAI / Gemini / Apple Speech / local — bring your own keys.
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