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Comment: scRNA compositional analysis tools
by
ATpoint
★
5.0k
None of this is related to Bioconductor. If you want Bioconductor, then consider https://bioconductor.org/books/release/OSCA.multisample/di…
Comment: scRNA compositional analysis tools
by
soumyaya21
•
0
Thanks for replying! To answer your question, the rare cell types were included. We have two conditions - Healthy (6 samples) and diseased …
Comment: Oligo RMA normalization : ERROR; return code from pthread_create() is 22
by
josep
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0
Worked for me too with: BiocManager::install("preprocessCore", configure.args = c(preprocessCore = "--disable-threading"), force = TRUE, up…
Answer: scRNA compositional analysis tools
by
danymukesha
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0
Here is what i think, the difference you are seeing may come down to what each method is testing and how it models the data.
**propeller…
Comment: Different GSEA results from same GEO dataset: Salmon vs TopHat pipeline
by
ATpoint
★
5.0k
You should compare the genewise statistics towards linear correlation. Everything else, especially FDRs are prone to false conclusions due …
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