I think the movie The Martian gave you a big hint.
You need:
- bacteria to make the ground into soil where plants can grow, nitrogen fixers among them
- algae and plants to produce oxygen,
- bacteria, worms and fungi to do the decomposition of the wastes
Once you have a cycle ensuring your humans can breathe, you can start adding the most relevant plants for human feeding: wheat, corn and rice with their pollinators and the livestock.