A bond type does not need to be specified to insert a bond. If one is not given, it will be inferred:

The type of the bond inferred may depend on the letters being linked:

Bonds can be added to hybrid strands:

Bonds can be added to sequence collections:

A single sequence can also be added to a collection:

A single motif or hybrid sequence will be modified into a collection:

If there are multiple sequence collections, they will be merged in the result:

If sequences are identical, canonicalization will use strand-level bonds for ordering:

If the sequences and strand-level bonds are identical, canonicalization will use sequence bonds for ordering:

In addition to sorting, single-strand collections are reduced to the strand and single motif hybrids are reduced to the motif:

Delete all higher-order bonds between the two indexes:

Deleting bonds always works on the outermost form, which is the form given by the "SequenceBondList" property:

Any genetic translation table entity can be used to specify start codons:

A specific codon or list of codons can be used as the start codon specification:

Modifications can be created in an operator form:

Modifications with further specifications can also be used in operator form:

Moving bonds inward can potentially bring them into the motif from several layers:

RNA sequences can be converted to circular RNA sequences:

Peptide sequences can be converted to circular peptide sequences:

Circular RNA sequences can be converted to linear RNA sequences:

Circular peptide sequences can be converted to linear peptide sequences:

Start the linear sequence from a specific position:

Relative bond positions are preserved when converting circular sequences to linear sequences:

Moving bonds inward will bring them from inside any motif or strand to the outermost sequence structure:

Splitting connections will renumber bonds based on new collection memberships: