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Genomes_to_MSA
Genomes_to_MSA PublicInput a table with a list of genome files > output a MSA file aligned with the Sibeliaz ready for phylogenetic analysis (+ RapidNJ tree included)
Python 1
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DamagePlots_from_BAM
DamagePlots_from_BAM PublicGenerate one PDF with different plots including read length, read % ID PMD scores, Damage plot and Eveness of coverage along the refence genome
Python 1
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Extract_NCBI_assembly_metadata
Extract_NCBI_assembly_metadata PublicThis script downloads assemblies and metadata from NCBI using accession numbers.
Python 1
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