The Clavel lab

This is the official GitHub account for the research group of Prof. Thomas Clavel.

Pinned Loading

Protologger Protologger Public

Forked from thh32/Protologger

Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

Python
maldipickr maldipickr Public

Dereplicate And Cherry-pick Mass Spectrometry Spectra

R 3 1
Benchmarking-shallow-Metagenomics Benchmarking-shallow-Metagenomics Public

Forked from NicoleTreichel/Benchmarking-shallow-Metagenomics

Shell 4 1
MiMiC2 MiMiC2 Public

Forked from thh32/MiMiC2

A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

Python

Repositories

Benchmarking-shallow-Metagenomics Public Forked from NicoleTreichel/Benchmarking-shallow-Metagenomics

ClavelLab/Benchmarking-shallow-Metagenomics's past year of commit activity

Shell 4 MIT 2 0 0 Updated Jul 13, 2026
maldipickr_manuscript Public
Worfklow for the data analysis in the maldipickr manuscript

ClavelLab/maldipickr_manuscript's past year of commit activity

R 0 GPL-3.0 0 0 0 Updated Jun 30, 2026
maldipickr Public
Dereplicate And Cherry-pick Mass Spectrometry Spectra

ClavelLab/maldipickr's past year of commit activity

R 3 GPL-3.0 1 5 (1 issue needs help) 0 Updated Jun 23, 2026
pocpbenchmark_manuscript Public
Code and manuscript for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

ClavelLab/pocpbenchmark_manuscript's past year of commit activity

TeX 0 GPL-3.0 0 0 0 Updated Nov 15, 2025
pocpbenchmark Public
Nextflow workflow for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

ClavelLab/pocpbenchmark's past year of commit activity

Nextflow 0 MIT 0 0 0 Updated Nov 15, 2025
hibc Public
Shiny application to display data and metadata for The Human Intestinal Bacterial Collection (HiBC)

ClavelLab/hibc's past year of commit activity

R 0 0 0 0 Updated Sep 1, 2025
github-repo-stats Public
Statistics aggregation for Github repositories for NFDI4Microbiota KPI

ClavelLab/github-repo-stats's past year of commit activity

0 1 0 0 Updated Apr 28, 2025
Protologger Public Forked from thh32/Protologger
Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

ClavelLab/Protologger's past year of commit activity

Python 0 3 0 0 Updated Mar 31, 2025
MiMiC2 Public Forked from thh32/MiMiC2
A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

ClavelLab/MiMiC2's past year of commit activity

Python 0 GPL-2.0 5 0 0 Updated Mar 18, 2025
genome-assembly Public
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

ClavelLab/genome-assembly's past year of commit activity

Python 4 MIT 1 0 0 Updated Mar 4, 2025

View all repositories

People

Top languages

Loading…

Most used topics

Loading…

Navigation Menu

The Clavel lab

Pinned Loading

Repositories

Uh oh!

Uh oh!

People

Top languages

Uh oh!

Most used topics

Uh oh!