#| code-shell: zsh
#| title: "User Identity Protocol"
#| echo: true
#| eval: true
$ cat profile.json | jq .
{
"name": "Jyotirmoy Das",
"role": "Principal Research Engineer @ Linköping University, Sweden 🇸🇪",
"specialization": [
"DNA Methylation", "MicroRNAs", "Evolution",
"Multi-omics", "Tumor biology", "Cancer Epigenetics"
],
"experience": {
"post_doc": "3+ years",
"core_facility": "5+ years"
},
"status": "Busy analyzing genomes 🧬"
}|
#| code-shell: python
#| title: "Technical Arsenal"
#| echo: true
#| eval: false
#| code-fold: true
class ResearchStack:
languages = ["R", "Python", "Bash", "Perl", "MATLAB"]
pipelines = ["Nextflow", "Snakemake"]
data_viz = ["Shiny", "Quarto", "RMarkdown", "ggplot2"]
ops_infra = ["Docker", "Singularity", "Conda", "GH Actions"]
def status(self):
return "Optimizing pipelines 🧪"
#| code-shell: yaml
#| title: "R-Universe Registry"
# R-Package Registry (R-Universe)
r_universe:
user: JD2112
status: online
platforms: [linux, macos, windows]#| code-shell: bash
#| title: "Conda Distribution"
# Conda/Anaconda Distribution
$ conda install -c jd2112 gsalit |
#| code-shell: r
#| title: "Featured Research Software"
#| echo: true
#| eval: false
#| code-fold: true
# Bioinformatics Solutions Catalog
featured_software <- list(
"TwistMethylFlow" = "NextFlow pipeline for Methylation",
"methylR" = "Shiny solution from sequencer",
"OlinkWrapper" = "R package for PEA data",
"ShinyWGCNA" = "Gene Co-expression Network",
"gsalit" = "Global screening Streamlit",
"Alveolar-Cell" = "Lung immunity validation"
)
#| code-shell: yaml
#| title: "Personal Configuration"
#| code-fold: true
profile:
interests: [Multi-omics, Epigenetics, AI/ML]
location: Linköping, Sweden 🇸🇪
hobbies: [🧱 Lego, 📚 Reading, ✒️ Fountain pens] |
