Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.

A GraphRAG-based Framework for Automated Clinical Concept Curation for NLP applications

MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard

Python client for fast access to the Drug-Gene Interaction Database (DGIDb)

Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases

This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI pending) The provided scripts are not designed to work out …

Code for deriving phenotypes from the second Mental Health Questionnaire in UK Biobank

A project page template for academic papers. Demo at https://eliahuhorwitz.github.io/Academic-project-page-template/

GWAS Summary Statistics Data Harmonisation

T-Rx: A toolbox for reproducible processing of prescriptions (Rx) from electronic health records

Making Protein folding accessible to all!

A game theoretic approach to explain the output of any machine learning model.

Tools for processing Nightingale NMR biomarker data in UK Biobank

Workshop on creating polygenic scores and using statistical methods to evaluate their performance

A library and microservice implementing the health and care terminology SNOMED CT with support for cross-maps, inference, fast full-text search, autocompletion, compositional grammar and the expres…

The aim of this piece of work was to find a mapping from DM+D codes to BNF chapters.

Implementation of the UK NHS dictionary of medicines and devices (dm+d).

AoUPRS is a Python module for calculating Polygenic Risk Scores (PRS) specific to the All of Us study.

Text matching UK Biobank Self-Reported medication descriptions for medication classification

topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire geno…

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

A multi-ancestry polygenic risk score approach

Programmer's guide about how to cook at home.

R package for benchmarking single cell analysis methods

Formalizing and benchmarking open problems in single-cell genomics