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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    29 9

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 149 41

  3. gdcdatamodel gdcdatamodel Public

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 52 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 22 6

Repositories

Showing 10 of 84 repositories
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 12 Apache-2.0 0 0 10 Updated Apr 30, 2025
  • aliquot-maf-tools Public

    Tools for creating and filtering aliquot-level MAFs

    NCI-GDC/aliquot-maf-tools’s past year of commit activity
    Python 5 Apache-2.0 2 0 0 Updated Apr 30, 2025
  • gdc-dnaseq-cwl Public

    CWL for GDC DNASeq workflows

    NCI-GDC/gdc-dnaseq-cwl’s past year of commit activity
    Common Workflow Language 22 Apache-2.0 14 0 3 Updated Apr 30, 2025
  • json-to-sqlite Public
    NCI-GDC/json-to-sqlite’s past year of commit activity
    Makefile 0 Apache-2.0 1 0 1 Updated Apr 30, 2025
  • gdc-mirnaseq-cwl Public

    CWL workflows and tools for the miRNA-Seq workflow

    NCI-GDC/gdc-mirnaseq-cwl’s past year of commit activity
    Common Workflow Language 1 Apache-2.0 1 0 1 Updated Apr 29, 2025
  • fastq_cleaner Public

    FASTQ Vendor Failed Reads Removal

    NCI-GDC/fastq_cleaner’s past year of commit activity
    C++ 0 Apache-2.0 0 1 1 Updated Apr 29, 2025
  • bam_readgroup_to_json Public

    Extract a readgroup from a BAM, and write it as json

    NCI-GDC/bam_readgroup_to_json’s past year of commit activity
    Python 0 Apache-2.0 3 0 4 Updated Apr 29, 2025
  • gdc-docs Public Forked from NCIP/gdc-docs

    Official repository for GDC User Guides in Markdown format

    NCI-GDC/gdc-docs’s past year of commit activity
    JavaScript 60 Apache-2.0 44 0 21 Updated Apr 28, 2025
  • indexclient Public Forked from uc-cdis/indexclient

    Prototype index service client.

    NCI-GDC/indexclient’s past year of commit activity
    Python 0 Apache-2.0 2 0 1 Updated Apr 23, 2025
  • indexd Public Forked from uc-cdis/indexd

    Index service server

    NCI-GDC/indexd’s past year of commit activity
    Python 3 Apache-2.0 20 0 13 Updated Apr 22, 2025
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