This repository has been archived and is no longer maintained. The code is provided for historical reference and may contain unpatched or unknown vulnerabilities. It should not be used in production systems.

This is a web-application designed to work with the ORIO (Online Resource for Integrative Omics) software package to create interactive visualizations of the results and allow users to upload their own custom genomic datasets.

Developer installation instructions are available.

Additional administrator actions for the ORIO website are documented below.

In some cases, we may want to upload feature-lists which are accessible by any researcher that could be shared. Associated sort-vectors related to these feature-lists can also be added.

To add global feature-lists, first access the administrator page. Then, create a new feature-list. Be sure to set the following options:

• Owner: Null (this is important; what makes available to all users)
• Name: anything (but use a consistent prefix like )
• Public: True
• Validated: True

The same process can be applied to sort vectors. Again, use some sort of common prefix to the name so it it's clear to users that these are shared content.

To add new genomes, you'll need a chromosome size file. These can be downloaded using download_chromosome_sizes method (found in orio/assemblies.py). After downloading the chromosome size files, on the admin page, create a genome assembly. Select the appropriate chromosome size file, and give it a human-friendly name.