Issues

• Deprecate Figaro in next Q2Pipe version

  NRCan/Q2Pipe#26 · Filter by author Patg13 opened on Feb 10, 2026

• Clustering Step 4 to include post clustering filtering

  enhancement
  NRCan/Q2Pipe#25 · Filter by author Patg13 opened on Feb 10, 2026

• Clustering step 4 does not include .qzv output for the rep-seqs

  bug
  NRCan/Q2Pipe#24 · Filter by author Patg13 opened on Feb 10, 2026

• Need to upgrade Qiime2 importation format

  enhancementLong term dev
  NRCan/Q2Pipe#18 · Filter by author Patg13 opened on Oct 6, 2023
  

• Pielou_e sometime crash with division by zero error

  bugLong term dev
  NRCan/Q2Pipe#14 · Filter by author Patg13 opened on Aug 4, 2023
  2

• Workflow Test infrastructure needed in case of Qiime2 update

  enhancementLong term dev
  NRCan/Q2Pipe#13 · Filter by author Patg13 opened on Aug 4, 2023

• Code review needed for Step 1 and 2

  bug
  NRCan/Q2Pipe#12 · Filter by author Patg13 opened on Aug 4, 2023

• Allow an analysis without providing a metadata file

  enhancement
  NRCan/Q2Pipe#11 · Filter by author Patg13 opened on Aug 4, 2023

• Need a checkup system in step 1 for matching metadata and manifest

  enhancement
  NRCan/Q2Pipe#10 · Filter by author Patg13 opened on Aug 4, 2023

• Need a better script to update optionfiles

  enhancement
  NRCan/Q2Pipe#9 · Filter by author Patg13 opened on Aug 4, 2023

• Rarefaction processing upgrade

  enhancementLong term dev
  NRCan/Q2Pipe#6 · Filter by author Patg13 opened on Aug 4, 2023

• Improve trimming parameter testing

  enhancement
  NRCan/Q2Pipe#5 · Filter by author Patg13 opened on Aug 4, 2023