feat: bioinformatics gateway skill — index to 400+ bio skills#2387
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feat: bioinformatics gateway skill — index to 400+ bio skills#2387
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Meta-skill that indexes 400+ bioinformatics skills from two open-source repos (GPTomics/bioSkills and ClawBio/ClawBio) and fetches domain-specific reference material on demand. Covers genomics, transcriptomics, single-cell, variant calling, pharmacogenomics, metagenomics, structural biology, and 20+ other computational biology domains. No dependencies bundled — the skill clones the relevant repo when needed and reads the domain-specific guides as reference material.
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Summary
New optional skill at
optional-skills/research/bioinformatics/that acts as a gateway to two open-source bioinformatics skill libraries:◆ GPTomics/bioSkills — 385 reference skills (code patterns, parameter guides, decision trees) covering 61 categories
◆ ClawBio/ClawBio — 33 runnable pipeline skills (executable scripts, reproducibility bundles)
Instead of converting and bundling 400+ domain-specific skills, this meta-skill:
No dependencies bundled. The skill just knows the landscape and fetches what it needs on demand.
Domains covered
Sequence fundamentals, read QC & alignment, variant calling, differential expression, single-cell RNA-seq, spatial transcriptomics, epigenomics (ChIP/ATAC/methylation/Hi-C), pharmacogenomics & clinical, population genetics & GWAS, metagenomics & microbiome, genome assembly & annotation, structural biology & chemoinformatics, proteomics, pathway analysis, immunoinformatics, CRISPR, workflow management, and more.
Install